Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25650 and BPHYT_RS25655 are separated by 111 nucleotides BPHYT_RS25655 and BPHYT_RS25660 are separated by 2 nucleotides BPHYT_RS25660 and BPHYT_RS25665 are separated by 204 nucleotides
BPHYT_RS25650: BPHYT_RS25650 - dihydroxy-acid dehydratase, at 1,327,200 to 1,328,966
_RS25650
BPHYT_RS25655: BPHYT_RS25655 - short-chain dehydrogenase, at 1,329,078 to 1,329,878
_RS25655
BPHYT_RS25660: BPHYT_RS25660 - MFS transporter, at 1,329,881 to 1,331,239
_RS25660
BPHYT_RS25665: BPHYT_RS25665 - LysR family transcriptional regulator, at 1,331,444 to 1,332,418
_RS25665
Position (kb) 1329
1330
1331
1332 Strain fitness (log2 ratio) -1
0
1 at 1329.505 kb on + strand, within BPHYT_RS25655 at 1330.435 kb on - strand, within BPHYT_RS25660 at 1330.689 kb on + strand, within BPHYT_RS25660 at 1330.879 kb on - strand, within BPHYT_RS25660 at 1330.879 kb on - strand, within BPHYT_RS25660 at 1331.011 kb on - strand, within BPHYT_RS25660 at 1332.189 kb on + strand, within BPHYT_RS25665
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,329,505 + BPHYT_RS25655 0.53 +1.0 1,330,435 - BPHYT_RS25660 0.41 +0.7 1,330,689 + BPHYT_RS25660 0.59 +1.5 1,330,879 - BPHYT_RS25660 0.73 -0.1 1,330,879 - BPHYT_RS25660 0.73 +0.3 1,331,011 - BPHYT_RS25660 0.83 +0.3 1,332,189 + BPHYT_RS25665 0.76 +0.6
Or see this region's nucleotide sequence