Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS25015 and BPHYT_RS25020 are separated by 138 nucleotides BPHYT_RS25020 and BPHYT_RS25025 are separated by 305 nucleotides BPHYT_RS25025 and BPHYT_RS25030 are separated by 269 nucleotides
BPHYT_RS25015: BPHYT_RS25015 - XRE family transcriptional regulator, at 1,182,248 to 1,182,817
_RS25015
BPHYT_RS25020: BPHYT_RS25020 - phospholipid-binding protein, at 1,182,956 to 1,183,315
_RS25020
BPHYT_RS25025: BPHYT_RS25025 - acyl-CoA dehydrogenase, at 1,183,621 to 1,185,426
_RS25025
BPHYT_RS25030: BPHYT_RS25030 - gluconate 2-dehydrogenase, at 1,185,696 to 1,186,469
_RS25030
Position (kb) 1183
1184
1185
1186 Strain fitness (log2 ratio) -1
0
1
2 at 1182.707 kb on + strand, within BPHYT_RS25015 at 1182.815 kb on + strand at 1182.815 kb on + strand at 1182.829 kb on + strand at 1183.248 kb on + strand, within BPHYT_RS25020 at 1183.414 kb on - strand at 1183.448 kb on - strand at 1183.834 kb on - strand, within BPHYT_RS25025 at 1184.521 kb on + strand, within BPHYT_RS25025 at 1184.558 kb on + strand, within BPHYT_RS25025 at 1185.047 kb on + strand, within BPHYT_RS25025 at 1185.134 kb on + strand, within BPHYT_RS25025 at 1185.564 kb on - strand at 1185.633 kb on - strand at 1185.633 kb on - strand at 1185.965 kb on + strand, within BPHYT_RS25030 at 1186.186 kb on - strand, within BPHYT_RS25030 at 1186.344 kb on - strand, within BPHYT_RS25030
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,182,707 + BPHYT_RS25015 0.81 +1.4 1,182,815 + -0.1 1,182,815 + +0.2 1,182,829 + +1.3 1,183,248 + BPHYT_RS25020 0.81 -0.3 1,183,414 - -0.4 1,183,448 - +0.3 1,183,834 - BPHYT_RS25025 0.12 -0.2 1,184,521 + BPHYT_RS25025 0.50 +1.0 1,184,558 + BPHYT_RS25025 0.52 +0.2 1,185,047 + BPHYT_RS25025 0.79 +0.9 1,185,134 + BPHYT_RS25025 0.84 +1.3 1,185,564 - -0.2 1,185,633 - +1.9 1,185,633 - -0.9 1,185,965 + BPHYT_RS25030 0.35 +1.0 1,186,186 - BPHYT_RS25030 0.63 -0.7 1,186,344 - BPHYT_RS25030 0.84 -1.6
Or see this region's nucleotide sequence