Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24475 and BPHYT_RS24480 are separated by 25 nucleotides BPHYT_RS24480 and BPHYT_RS24485 overlap by 4 nucleotides BPHYT_RS24485 and BPHYT_RS24490 are separated by 91 nucleotides
BPHYT_RS24475: BPHYT_RS24475 - AraC family transcriptional regulator, at 1,060,756 to 1,061,724
_RS24475
BPHYT_RS24480: BPHYT_RS24480 - molybdopterin binding oxidoreductase, at 1,061,750 to 1,062,526
_RS24480
BPHYT_RS24485: BPHYT_RS24485 - thioredoxin reductase, at 1,062,523 to 1,063,158
_RS24485
BPHYT_RS24490: BPHYT_RS24490 - hypothetical protein, at 1,063,250 to 1,063,882
_RS24490
Position (kb) 1061
1062
1063 Strain fitness (log2 ratio) -1
0
1 at 1060.987 kb on + strand, within BPHYT_RS24475 at 1061.002 kb on + strand, within BPHYT_RS24475 at 1061.002 kb on + strand, within BPHYT_RS24475 at 1061.265 kb on - strand, within BPHYT_RS24475 at 1061.491 kb on + strand, within BPHYT_RS24475 at 1061.751 kb on + strand at 1061.752 kb on - strand at 1061.973 kb on + strand, within BPHYT_RS24480 at 1062.193 kb on - strand, within BPHYT_RS24480 at 1062.232 kb on - strand, within BPHYT_RS24480 at 1062.766 kb on + strand, within BPHYT_RS24485 at 1062.767 kb on - strand, within BPHYT_RS24485 at 1062.780 kb on - strand, within BPHYT_RS24485 at 1062.780 kb on - strand, within BPHYT_RS24485 at 1062.803 kb on + strand, within BPHYT_RS24485 at 1062.926 kb on + strand, within BPHYT_RS24485 at 1062.927 kb on - strand, within BPHYT_RS24485 at 1063.050 kb on - strand, within BPHYT_RS24485 at 1063.178 kb on - strand at 1063.391 kb on - strand, within BPHYT_RS24490 at 1063.444 kb on + strand, within BPHYT_RS24490
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,060,987 + BPHYT_RS24475 0.24 -0.2 1,061,002 + BPHYT_RS24475 0.25 -0.5 1,061,002 + BPHYT_RS24475 0.25 +0.3 1,061,265 - BPHYT_RS24475 0.53 +1.4 1,061,491 + BPHYT_RS24475 0.76 +0.4 1,061,751 + +0.3 1,061,752 - +0.3 1,061,973 + BPHYT_RS24480 0.29 -0.4 1,062,193 - BPHYT_RS24480 0.57 -0.9 1,062,232 - BPHYT_RS24480 0.62 -0.2 1,062,766 + BPHYT_RS24485 0.38 -1.5 1,062,767 - BPHYT_RS24485 0.38 +0.7 1,062,780 - BPHYT_RS24485 0.40 +0.7 1,062,780 - BPHYT_RS24485 0.40 -0.9 1,062,803 + BPHYT_RS24485 0.44 -1.0 1,062,926 + BPHYT_RS24485 0.63 +0.5 1,062,927 - BPHYT_RS24485 0.64 -1.1 1,063,050 - BPHYT_RS24485 0.83 -0.3 1,063,178 - +1.4 1,063,391 - BPHYT_RS24490 0.22 +0.3 1,063,444 + BPHYT_RS24490 0.31 +1.2
Or see this region's nucleotide sequence