Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23990 and BPHYT_RS23995 are separated by 12 nucleotides BPHYT_RS23995 and BPHYT_RS24000 are separated by 293 nucleotides BPHYT_RS24000 and BPHYT_RS24005 are separated by 102 nucleotides BPHYT_RS24005 and BPHYT_RS24010 are separated by 14 nucleotides
BPHYT_RS23990: BPHYT_RS23990 - N-hydroxyarylamine O-acetyltransferase, at 948,653 to 949,492
_RS23990
BPHYT_RS23995: BPHYT_RS23995 - isoprenylcysteine carboxyl methyltransferase, at 949,505 to 950,185
_RS23995
BPHYT_RS24000: BPHYT_RS24000 - L-histidine ABC transporter, substrate-binding component <small>(from data)</small>, at 950,479 to 951,339
_RS24000
BPHYT_RS24005: BPHYT_RS24005 - L-histidine ABC transporter, permease component 1 <small>(from data)</small>, at 951,442 to 952,164
_RS24005
BPHYT_RS24010: BPHYT_RS24010 - L-histidine ABC transporter, permease component 2 <small>(from data)</small>, at 952,179 to 952,931
_RS24010
Position (kb) 950
951
952 Strain fitness (log2 ratio) -1
0
1
2 at 949.901 kb on + strand, within BPHYT_RS23995 at 949.901 kb on + strand, within BPHYT_RS23995 at 949.943 kb on - strand, within BPHYT_RS23995 at 949.989 kb on - strand, within BPHYT_RS23995 at 950.078 kb on - strand, within BPHYT_RS23995 at 950.141 kb on + strand at 950.728 kb on - strand, within BPHYT_RS24000 at 951.121 kb on + strand, within BPHYT_RS24000 at 951.125 kb on - strand, within BPHYT_RS24000 at 951.436 kb on + strand at 951.491 kb on + strand at 951.622 kb on + strand, within BPHYT_RS24005 at 951.622 kb on + strand, within BPHYT_RS24005 at 951.791 kb on - strand, within BPHYT_RS24005 at 952.039 kb on + strand, within BPHYT_RS24005
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 949,901 + BPHYT_RS23995 0.58 +0.3 949,901 + BPHYT_RS23995 0.58 -0.2 949,943 - BPHYT_RS23995 0.64 +0.9 949,989 - BPHYT_RS23995 0.71 +1.8 950,078 - BPHYT_RS23995 0.84 -1.7 950,141 + -0.7 950,728 - BPHYT_RS24000 0.29 -0.3 951,121 + BPHYT_RS24000 0.75 +1.1 951,125 - BPHYT_RS24000 0.75 -0.1 951,436 + +0.1 951,491 + +0.3 951,622 + BPHYT_RS24005 0.25 -0.7 951,622 + BPHYT_RS24005 0.25 +1.6 951,791 - BPHYT_RS24005 0.48 -0.2 952,039 + BPHYT_RS24005 0.83 +1.8
Or see this region's nucleotide sequence