Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23885

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23880 and BPHYT_RS23885 overlap by 4 nucleotidesBPHYT_RS23885 and BPHYT_RS23890 are separated by 21 nucleotides BPHYT_RS23880: BPHYT_RS23880 - sugar ABC transporter permease, at 924,311 to 925,342 _RS23880 BPHYT_RS23885: BPHYT_RS23885 - ABC transporter permease, at 925,339 to 926,436 _RS23885 BPHYT_RS23890: BPHYT_RS23890 - MFS transporter, at 926,458 to 927,759 _RS23890 Position (kb) 925 926 927Strain fitness (log2 ratio) -1 0 1 2at 924.546 kb on + strand, within BPHYT_RS23880at 925.199 kb on + strand, within BPHYT_RS23880at 925.900 kb on + strand, within BPHYT_RS23885at 925.901 kb on - strand, within BPHYT_RS23885at 925.936 kb on + strand, within BPHYT_RS23885at 926.009 kb on - strand, within BPHYT_RS23885at 926.059 kb on + strand, within BPHYT_RS23885at 926.059 kb on + strand, within BPHYT_RS23885at 926.060 kb on - strand, within BPHYT_RS23885at 926.127 kb on - strand, within BPHYT_RS23885at 926.159 kb on - strand, within BPHYT_RS23885at 926.849 kb on + strand, within BPHYT_RS23890at 926.874 kb on - strand, within BPHYT_RS23890at 926.946 kb on - strand, within BPHYT_RS23890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
remove
924,546 + BPHYT_RS23880 0.23 +1.0
925,199 + BPHYT_RS23880 0.86 +1.1
925,900 + BPHYT_RS23885 0.51 -0.7
925,901 - BPHYT_RS23885 0.51 +1.2
925,936 + BPHYT_RS23885 0.54 +0.9
926,009 - BPHYT_RS23885 0.61 -1.5
926,059 + BPHYT_RS23885 0.66 +1.8
926,059 + BPHYT_RS23885 0.66 +0.3
926,060 - BPHYT_RS23885 0.66 +1.7
926,127 - BPHYT_RS23885 0.72 +0.2
926,159 - BPHYT_RS23885 0.75 +1.1
926,849 + BPHYT_RS23890 0.30 +0.7
926,874 - BPHYT_RS23890 0.32 +0.3
926,946 - BPHYT_RS23890 0.37 -0.5

Or see this region's nucleotide sequence