Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23160

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23155 and BPHYT_RS23160 are separated by 28 nucleotidesBPHYT_RS23160 and BPHYT_RS23165 are separated by 32 nucleotides BPHYT_RS23155: BPHYT_RS23155 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data), at 760,632 to 762,080 _RS23155 BPHYT_RS23160: BPHYT_RS23160 - Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data), at 762,109 to 763,443 _RS23160 BPHYT_RS23165: BPHYT_RS23165 - glutamine amidotransferase, at 763,476 to 764,270 _RS23165 Position (kb) 762 763 764Strain fitness (log2 ratio) -1 0 1 2at 761.248 kb on + strand, within BPHYT_RS23155at 762.734 kb on + strand, within BPHYT_RS23160at 762.734 kb on + strand, within BPHYT_RS23160at 762.948 kb on - strand, within BPHYT_RS23160at 763.447 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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761,248 + BPHYT_RS23155 0.43 -0.2
762,734 + BPHYT_RS23160 0.47 +1.0
762,734 + BPHYT_RS23160 0.47 +0.3
762,948 - BPHYT_RS23160 0.63 +2.1
763,447 + +0.1

Or see this region's nucleotide sequence