Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22870 and BPHYT_RS22875 are separated by 314 nucleotides BPHYT_RS22875 and BPHYT_RS22880 are separated by 86 nucleotides BPHYT_RS22880 and BPHYT_RS22885 are separated by 387 nucleotides
BPHYT_RS22870: BPHYT_RS22870 - copper transporter, at 688,891 to 690,564
_RS22870
BPHYT_RS22875: BPHYT_RS22875 - hypothetical protein, at 690,879 to 692,795
_RS22875
BPHYT_RS22880: BPHYT_RS22880 - hypothetical protein, at 692,882 to 693,214
_RS22880
BPHYT_RS22885: BPHYT_RS22885 - hypothetical protein, at 693,602 to 694,387
_RS22885
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -2
-1
0
1
2 at 690.555 kb on + strand at 690.764 kb on - strand at 690.842 kb on - strand at 690.910 kb on + strand at 691.230 kb on + strand, within BPHYT_RS22875 at 691.623 kb on + strand, within BPHYT_RS22875 at 692.280 kb on + strand, within BPHYT_RS22875 at 692.472 kb on + strand, within BPHYT_RS22875 at 692.621 kb on + strand at 692.621 kb on + strand at 692.636 kb on + strand at 692.639 kb on + strand at 692.697 kb on + strand at 692.698 kb on - strand at 692.754 kb on + strand at 692.755 kb on - strand at 692.901 kb on + strand at 692.901 kb on + strand at 692.902 kb on - strand at 693.029 kb on + strand, within BPHYT_RS22880 at 693.035 kb on + strand, within BPHYT_RS22880
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 690,555 + +0.6 690,764 - +0.6 690,842 - -2.5 690,910 + +0.9 691,230 + BPHYT_RS22875 0.18 -0.8 691,623 + BPHYT_RS22875 0.39 -0.5 692,280 + BPHYT_RS22875 0.73 -0.6 692,472 + BPHYT_RS22875 0.83 -0.2 692,621 + +1.0 692,621 + +0.7 692,636 + -0.7 692,639 + +0.1 692,697 + -0.2 692,698 - -0.6 692,754 + -0.9 692,755 - +0.1 692,901 + -0.2 692,901 + +0.0 692,902 - +2.7 693,029 + BPHYT_RS22880 0.44 +0.3 693,035 + BPHYT_RS22880 0.46 -0.4
Or see this region's nucleotide sequence