Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22855 and BPHYT_RS22860 are separated by 126 nucleotides BPHYT_RS22860 and BPHYT_RS22865 overlap by 4 nucleotides BPHYT_RS22865 and BPHYT_RS22870 are separated by 30 nucleotides
BPHYT_RS22855: BPHYT_RS22855 - aldehyde-activating protein, at 686,300 to 686,671
_RS22855
BPHYT_RS22860: BPHYT_RS22860 - chemotaxis protein CheY, at 686,798 to 687,538
_RS22860
BPHYT_RS22865: BPHYT_RS22865 - ATPase, at 687,535 to 688,860
_RS22865
BPHYT_RS22870: BPHYT_RS22870 - copper transporter, at 688,891 to 690,564
_RS22870
Position (kb) 687
688
689 Strain fitness (log2 ratio) -1
0
1 at 686.557 kb on + strand, within BPHYT_RS22855 at 686.612 kb on + strand, within BPHYT_RS22855 at 686.613 kb on - strand, within BPHYT_RS22855 at 686.615 kb on - strand, within BPHYT_RS22855 at 686.817 kb on + strand at 687.407 kb on - strand, within BPHYT_RS22860 at 687.782 kb on - strand, within BPHYT_RS22865 at 688.219 kb on - strand, within BPHYT_RS22865 at 688.606 kb on - strand, within BPHYT_RS22865 at 689.459 kb on + strand, within BPHYT_RS22870 at 689.463 kb on - strand, within BPHYT_RS22870
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 686,557 + BPHYT_RS22855 0.69 -0.7 686,612 + BPHYT_RS22855 0.84 -1.0 686,613 - BPHYT_RS22855 0.84 -1.2 686,615 - BPHYT_RS22855 0.85 -1.0 686,817 + -1.7 687,407 - BPHYT_RS22860 0.82 +0.9 687,782 - BPHYT_RS22865 0.19 +0.6 688,219 - BPHYT_RS22865 0.52 +0.8 688,606 - BPHYT_RS22865 0.81 +0.1 689,459 + BPHYT_RS22870 0.34 -0.3 689,463 - BPHYT_RS22870 0.34 +1.1
Or see this region's nucleotide sequence