Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22630 and BPHYT_RS22635 are separated by 20 nucleotides BPHYT_RS22635 and BPHYT_RS22640 are separated by 350 nucleotides
BPHYT_RS22630: BPHYT_RS22630 - transcriptional regulator, at 633,871 to 634,611
_RS22630
BPHYT_RS22635: BPHYT_RS22635 - dihydrodipicolinate synthase, at 634,632 to 635,537
_RS22635
BPHYT_RS22640: BPHYT_RS22640 - hydroxyproline-2-epimerase, at 635,888 to 636,844
_RS22640
Position (kb) 634
635
636 Strain fitness (log2 ratio) -2
-1
0
1
2 at 633.664 kb on + strand at 633.665 kb on - strand at 633.751 kb on + strand at 633.791 kb on - strand at 633.794 kb on + strand at 633.795 kb on - strand at 633.800 kb on - strand at 633.853 kb on + strand at 633.858 kb on + strand at 633.859 kb on - strand at 633.859 kb on - strand at 633.876 kb on + strand at 633.876 kb on + strand at 633.959 kb on - strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.165 kb on + strand, within BPHYT_RS22630 at 634.232 kb on - strand, within BPHYT_RS22630 at 634.525 kb on - strand, within BPHYT_RS22630 at 634.831 kb on + strand, within BPHYT_RS22635 at 634.832 kb on - strand, within BPHYT_RS22635 at 634.876 kb on + strand, within BPHYT_RS22635 at 634.877 kb on - strand, within BPHYT_RS22635 at 634.909 kb on - strand, within BPHYT_RS22635 at 635.132 kb on - strand, within BPHYT_RS22635 at 635.207 kb on - strand, within BPHYT_RS22635 at 635.472 kb on + strand at 635.473 kb on - strand at 635.514 kb on + strand at 635.529 kb on - strand at 635.576 kb on - strand at 635.576 kb on - strand at 635.911 kb on + strand at 635.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 633,664 + -0.4 633,665 - -1.5 633,751 + +1.4 633,791 - -1.9 633,794 + +0.2 633,795 - +0.6 633,800 - +1.3 633,853 + -0.2 633,858 + -0.9 633,859 - +0.2 633,859 - +0.5 633,876 + -0.3 633,876 + +1.8 633,959 - BPHYT_RS22630 0.12 -0.6 634,165 + BPHYT_RS22630 0.40 +1.6 634,165 + BPHYT_RS22630 0.40 +0.9 634,232 - BPHYT_RS22630 0.49 +0.3 634,525 - BPHYT_RS22630 0.88 +0.2 634,831 + BPHYT_RS22635 0.22 -0.4 634,832 - BPHYT_RS22635 0.22 +1.1 634,876 + BPHYT_RS22635 0.27 +1.8 634,877 - BPHYT_RS22635 0.27 +0.6 634,909 - BPHYT_RS22635 0.31 +0.3 635,132 - BPHYT_RS22635 0.55 +1.1 635,207 - BPHYT_RS22635 0.63 -0.0 635,472 + +0.4 635,473 - -0.5 635,514 + -0.4 635,529 - -0.4 635,576 - +1.9 635,576 - -0.1 635,911 + +0.6 635,912 - -0.1
Or see this region's nucleotide sequence