Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22610 and BPHYT_RS22615 are separated by 64 nucleotides BPHYT_RS22615 and BPHYT_RS22620 are separated by 119 nucleotides BPHYT_RS22620 and BPHYT_RS22625 are separated by 156 nucleotides
BPHYT_RS22610: BPHYT_RS22610 - quinol oxidase, at 629,651 to 630,082
_RS22610
BPHYT_RS22615: BPHYT_RS22615 - hypothetical protein, at 630,147 to 630,419
_RS22615
BPHYT_RS22620: BPHYT_RS22620 - MFS transporter, at 630,539 to 632,014
_RS22620
BPHYT_RS22625: BPHYT_RS22625 - MFS transporter, at 632,171 to 633,472
_RS22625
Position (kb) 630
631
632
633 Strain fitness (log2 ratio) -1
0
1
2 at 629.554 kb on + strand at 629.630 kb on - strand at 629.638 kb on - strand at 629.692 kb on + strand at 630.072 kb on + strand at 630.146 kb on - strand at 630.928 kb on - strand, within BPHYT_RS22620 at 631.066 kb on + strand, within BPHYT_RS22620 at 631.090 kb on - strand, within BPHYT_RS22620 at 631.116 kb on + strand, within BPHYT_RS22620 at 631.116 kb on + strand, within BPHYT_RS22620 at 631.119 kb on + strand, within BPHYT_RS22620 at 631.120 kb on - strand, within BPHYT_RS22620 at 631.138 kb on + strand, within BPHYT_RS22620 at 631.289 kb on + strand, within BPHYT_RS22620 at 631.290 kb on - strand, within BPHYT_RS22620 at 631.290 kb on - strand, within BPHYT_RS22620 at 631.752 kb on - strand, within BPHYT_RS22620 at 631.843 kb on - strand, within BPHYT_RS22620 at 631.925 kb on + strand at 631.926 kb on - strand at 632.026 kb on + strand at 632.027 kb on - strand at 632.027 kb on - strand at 632.241 kb on + strand at 632.241 kb on + strand at 632.242 kb on - strand at 632.242 kb on - strand at 632.317 kb on - strand, within BPHYT_RS22625 at 632.431 kb on - strand, within BPHYT_RS22625 at 632.481 kb on + strand, within BPHYT_RS22625 at 632.481 kb on + strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.482 kb on - strand, within BPHYT_RS22625 at 632.485 kb on - strand, within BPHYT_RS22625 at 632.485 kb on - strand, within BPHYT_RS22625 at 632.830 kb on - strand, within BPHYT_RS22625 at 632.988 kb on + strand, within BPHYT_RS22625 at 632.989 kb on - strand, within BPHYT_RS22625
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 629,554 + +2.1 629,630 - -0.2 629,638 - +0.3 629,692 + -0.7 630,072 + +0.4 630,146 - -0.4 630,928 - BPHYT_RS22620 0.26 +0.6 631,066 + BPHYT_RS22620 0.36 -0.0 631,090 - BPHYT_RS22620 0.37 -0.2 631,116 + BPHYT_RS22620 0.39 +2.0 631,116 + BPHYT_RS22620 0.39 -0.3 631,119 + BPHYT_RS22620 0.39 +1.3 631,120 - BPHYT_RS22620 0.39 +0.5 631,138 + BPHYT_RS22620 0.41 +0.4 631,289 + BPHYT_RS22620 0.51 -1.3 631,290 - BPHYT_RS22620 0.51 -0.1 631,290 - BPHYT_RS22620 0.51 +2.4 631,752 - BPHYT_RS22620 0.82 +0.9 631,843 - BPHYT_RS22620 0.88 +0.5 631,925 + -0.7 631,926 - -0.1 632,026 + +2.1 632,027 - +1.6 632,027 - -0.7 632,241 + -1.1 632,241 + +0.5 632,242 - +0.3 632,242 - +0.0 632,317 - BPHYT_RS22625 0.11 +0.2 632,431 - BPHYT_RS22625 0.20 -0.2 632,481 + BPHYT_RS22625 0.24 +1.0 632,481 + BPHYT_RS22625 0.24 -0.4 632,482 - BPHYT_RS22625 0.24 +2.1 632,482 - BPHYT_RS22625 0.24 +0.4 632,482 - BPHYT_RS22625 0.24 -0.4 632,485 - BPHYT_RS22625 0.24 +1.2 632,485 - BPHYT_RS22625 0.24 +1.4 632,830 - BPHYT_RS22625 0.51 +1.9 632,988 + BPHYT_RS22625 0.63 +0.3 632,989 - BPHYT_RS22625 0.63 +0.4
Or see this region's nucleotide sequence