Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22510 and BPHYT_RS22515 are separated by 56 nucleotides BPHYT_RS22515 and BPHYT_RS22520 are separated by 13 nucleotides
BPHYT_RS22510: BPHYT_RS22510 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 608,553 to 609,827
_RS22510
BPHYT_RS22515: BPHYT_RS22515 - multidrug efflux RND transporter permease subunit, at 609,884 to 613,069
_RS22515
BPHYT_RS22520: BPHYT_RS22520 - RND transporter, at 613,083 to 614,684
_RS22520
Position (kb) 609
610
611
612
613
614 Strain fitness (log2 ratio) -1
0
1
2 at 609.211 kb on - strand, within BPHYT_RS22510 at 609.240 kb on + strand, within BPHYT_RS22510 at 609.241 kb on - strand, within BPHYT_RS22510 at 609.430 kb on - strand, within BPHYT_RS22510 at 609.430 kb on - strand, within BPHYT_RS22510 at 609.644 kb on - strand, within BPHYT_RS22510 at 609.962 kb on - strand at 610.346 kb on + strand, within BPHYT_RS22515 at 610.346 kb on + strand, within BPHYT_RS22515 at 610.358 kb on + strand, within BPHYT_RS22515 at 610.359 kb on - strand, within BPHYT_RS22515 at 610.859 kb on + strand, within BPHYT_RS22515 at 610.918 kb on + strand, within BPHYT_RS22515 at 611.183 kb on + strand, within BPHYT_RS22515 at 611.767 kb on + strand, within BPHYT_RS22515 at 611.871 kb on - strand, within BPHYT_RS22515 at 611.871 kb on - strand at 612.062 kb on + strand, within BPHYT_RS22515 at 612.209 kb on + strand, within BPHYT_RS22515 at 612.360 kb on - strand, within BPHYT_RS22515 at 612.368 kb on + strand, within BPHYT_RS22515 at 612.371 kb on - strand, within BPHYT_RS22515 at 612.498 kb on - strand, within BPHYT_RS22515 at 612.582 kb on - strand, within BPHYT_RS22515 at 612.980 kb on + strand at 612.981 kb on - strand at 613.043 kb on + strand at 613.720 kb on - strand, within BPHYT_RS22520 at 613.759 kb on - strand, within BPHYT_RS22520 at 613.759 kb on - strand, within BPHYT_RS22520
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 609,211 - BPHYT_RS22510 0.52 -0.9 609,240 + BPHYT_RS22510 0.54 +0.6 609,241 - BPHYT_RS22510 0.54 -0.4 609,430 - BPHYT_RS22510 0.69 +1.7 609,430 - BPHYT_RS22510 0.69 -0.0 609,644 - BPHYT_RS22510 0.86 -1.0 609,962 - +0.1 610,346 + BPHYT_RS22515 0.15 +0.4 610,346 + BPHYT_RS22515 0.15 -0.5 610,358 + BPHYT_RS22515 0.15 -0.8 610,359 - BPHYT_RS22515 0.15 +0.7 610,859 + BPHYT_RS22515 0.31 +0.2 610,918 + BPHYT_RS22515 0.32 -0.1 611,183 + BPHYT_RS22515 0.41 -0.6 611,767 + BPHYT_RS22515 0.59 -0.6 611,871 - BPHYT_RS22515 0.62 +0.6 611,871 - +0.0 612,062 + BPHYT_RS22515 0.68 -0.9 612,209 + BPHYT_RS22515 0.73 +0.4 612,360 - BPHYT_RS22515 0.78 -0.2 612,368 + BPHYT_RS22515 0.78 +2.1 612,371 - BPHYT_RS22515 0.78 -0.2 612,498 - BPHYT_RS22515 0.82 +0.4 612,582 - BPHYT_RS22515 0.85 -0.4 612,980 + +1.9 612,981 - -0.2 613,043 + -0.1 613,720 - BPHYT_RS22520 0.40 +0.3 613,759 - BPHYT_RS22520 0.42 +1.4 613,759 - BPHYT_RS22520 0.42 -1.2
Or see this region's nucleotide sequence