Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22355 and BPHYT_RS22360 are separated by 352 nucleotides BPHYT_RS22360 and BPHYT_RS22365 are separated by 24 nucleotides
BPHYT_RS22355: BPHYT_RS22355 - HAD family hydrolase, at 571,955 to 572,629
_RS22355
BPHYT_RS22360: BPHYT_RS22360 - response regulator receiver, at 572,982 to 573,944
_RS22360
BPHYT_RS22365: BPHYT_RS22365 - membrane protein, at 573,969 to 575,411
_RS22365
Position (kb) 572
573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 572.196 kb on - strand, within BPHYT_RS22355 at 572.382 kb on - strand, within BPHYT_RS22355 at 572.627 kb on + strand at 572.720 kb on + strand at 572.723 kb on + strand at 572.724 kb on - strand at 572.724 kb on - strand at 572.726 kb on - strand at 572.796 kb on - strand at 572.828 kb on + strand at 572.829 kb on - strand at 572.872 kb on + strand at 572.982 kb on - strand at 573.052 kb on - strand at 573.541 kb on - strand, within BPHYT_RS22360 at 573.541 kb on - strand, within BPHYT_RS22360 at 573.861 kb on + strand at 573.892 kb on + strand at 573.893 kb on - strand at 573.973 kb on - strand at 573.973 kb on - strand at 574.023 kb on + strand at 574.028 kb on - strand at 574.028 kb on - strand at 574.168 kb on - strand, within BPHYT_RS22365 at 574.200 kb on + strand, within BPHYT_RS22365 at 574.260 kb on + strand, within BPHYT_RS22365 at 574.286 kb on - strand, within BPHYT_RS22365 at 574.512 kb on + strand, within BPHYT_RS22365 at 574.524 kb on + strand, within BPHYT_RS22365 at 574.525 kb on - strand, within BPHYT_RS22365 at 574.753 kb on - strand, within BPHYT_RS22365
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 572,196 - BPHYT_RS22355 0.36 -1.0 572,382 - BPHYT_RS22355 0.63 +0.5 572,627 + -0.1 572,720 + -1.1 572,723 + +0.9 572,724 - +0.8 572,724 - +0.8 572,726 - -0.2 572,796 - +1.3 572,828 + +0.3 572,829 - -0.4 572,872 + -0.7 572,982 - -0.1 573,052 - +1.1 573,541 - BPHYT_RS22360 0.58 -1.4 573,541 - BPHYT_RS22360 0.58 -2.3 573,861 + -0.4 573,892 + -0.7 573,893 - +0.4 573,973 - +0.3 573,973 - +1.0 574,023 + +1.1 574,028 - -1.3 574,028 - +0.7 574,168 - BPHYT_RS22365 0.14 +0.4 574,200 + BPHYT_RS22365 0.16 -0.7 574,260 + BPHYT_RS22365 0.20 +0.4 574,286 - BPHYT_RS22365 0.22 +0.8 574,512 + BPHYT_RS22365 0.38 -1.7 574,524 + BPHYT_RS22365 0.38 +0.4 574,525 - BPHYT_RS22365 0.39 +0.3 574,753 - BPHYT_RS22365 0.54 -0.9
Or see this region's nucleotide sequence