Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
BPHYT_RS22345: BPHYT_RS22345 - hypothetical protein, at 568,495 to 570,741
_RS22345
Position (kb) 568
569
570
571 Strain fitness (log2 ratio) -2
-1
0
1
2 at 567.640 kb on - strand at 568.487 kb on + strand at 569.094 kb on + strand, within BPHYT_RS22345 at 569.192 kb on + strand, within BPHYT_RS22345 at 569.494 kb on + strand, within BPHYT_RS22345 at 569.553 kb on + strand, within BPHYT_RS22345 at 569.615 kb on - strand, within BPHYT_RS22345 at 569.617 kb on + strand, within BPHYT_RS22345 at 569.617 kb on + strand, within BPHYT_RS22345 at 569.673 kb on + strand, within BPHYT_RS22345 at 569.674 kb on - strand, within BPHYT_RS22345 at 569.698 kb on + strand, within BPHYT_RS22345 at 569.719 kb on + strand, within BPHYT_RS22345 at 569.720 kb on - strand, within BPHYT_RS22345 at 569.720 kb on - strand, within BPHYT_RS22345 at 569.923 kb on + strand, within BPHYT_RS22345 at 569.923 kb on + strand, within BPHYT_RS22345 at 570.119 kb on - strand, within BPHYT_RS22345 at 570.136 kb on + strand, within BPHYT_RS22345 at 570.137 kb on - strand, within BPHYT_RS22345 at 570.532 kb on + strand at 570.532 kb on + strand at 570.533 kb on - strand at 570.628 kb on - strand at 570.843 kb on + strand at 570.843 kb on + strand at 570.851 kb on - strand at 570.964 kb on - strand at 571.054 kb on + strand at 571.143 kb on - strand at 571.143 kb on - strand at 571.493 kb on + strand at 571.494 kb on - strand at 571.536 kb on + strand at 571.568 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 567,640 - +2.6 568,487 + +0.3 569,094 + BPHYT_RS22345 0.27 +0.5 569,192 + BPHYT_RS22345 0.31 +0.5 569,494 + BPHYT_RS22345 0.44 -0.3 569,553 + BPHYT_RS22345 0.47 +2.3 569,615 - BPHYT_RS22345 0.50 -0.0 569,617 + BPHYT_RS22345 0.50 +2.1 569,617 + BPHYT_RS22345 0.50 +1.3 569,673 + BPHYT_RS22345 0.52 +0.9 569,674 - BPHYT_RS22345 0.52 +1.3 569,698 + BPHYT_RS22345 0.54 -0.2 569,719 + BPHYT_RS22345 0.54 -0.8 569,720 - BPHYT_RS22345 0.55 +1.1 569,720 - BPHYT_RS22345 0.55 +0.2 569,923 + BPHYT_RS22345 0.64 +0.1 569,923 + BPHYT_RS22345 0.64 -0.7 570,119 - BPHYT_RS22345 0.72 +0.8 570,136 + BPHYT_RS22345 0.73 -0.8 570,137 - BPHYT_RS22345 0.73 -0.2 570,532 + -0.4 570,532 + -0.3 570,533 - -0.8 570,628 - -0.3 570,843 + -0.7 570,843 + -0.8 570,851 - -0.3 570,964 - -0.2 571,054 + +0.3 571,143 - +0.5 571,143 - +0.1 571,493 + -2.3 571,494 - -0.2 571,536 + -0.8 571,568 + +1.1
Or see this region's nucleotide sequence