Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22235 and BPHYT_RS22240 are separated by 256 nucleotides BPHYT_RS22240 and BPHYT_RS22245 overlap by 4 nucleotides BPHYT_RS22245 and BPHYT_RS22250 are separated by 74 nucleotides
BPHYT_RS22235: BPHYT_RS22235 - sensor histidine kinase, at 546,243 to 547,658
_RS22235
BPHYT_RS22240: BPHYT_RS22240 - hypothetical protein, at 547,915 to 548,112
_RS22240
BPHYT_RS22245: BPHYT_RS22245 - transporter for D-alanine, D-lactate, and pyruvate (MctP) <small>(from data)</small>, at 548,109 to 549,590
_RS22245
BPHYT_RS22250: BPHYT_RS22250 - D-amino acid dehydrogenase, at 549,665 to 550,909
_RS22250
Position (kb) 548
549
550 Strain fitness (log2 ratio) -2
-1
0
1 at 547.112 kb on - strand, within BPHYT_RS22235 at 547.217 kb on - strand, within BPHYT_RS22235 at 547.217 kb on - strand, within BPHYT_RS22235 at 547.523 kb on + strand at 547.524 kb on - strand at 547.525 kb on + strand at 547.526 kb on - strand at 547.687 kb on - strand at 547.690 kb on - strand at 547.692 kb on + strand at 547.693 kb on - strand at 547.710 kb on - strand at 547.745 kb on + strand at 547.746 kb on - strand at 547.814 kb on - strand at 547.816 kb on + strand at 547.816 kb on + strand at 547.816 kb on + strand at 547.816 kb on + strand at 547.817 kb on - strand at 547.972 kb on + strand, within BPHYT_RS22240 at 547.975 kb on - strand, within BPHYT_RS22240 at 547.975 kb on - strand, within BPHYT_RS22240 at 548.042 kb on - strand, within BPHYT_RS22240 at 548.086 kb on + strand, within BPHYT_RS22240 at 548.087 kb on - strand, within BPHYT_RS22240 at 548.298 kb on + strand, within BPHYT_RS22245 at 548.307 kb on + strand, within BPHYT_RS22245 at 548.338 kb on - strand, within BPHYT_RS22245 at 548.538 kb on + strand, within BPHYT_RS22245 at 548.539 kb on - strand, within BPHYT_RS22245 at 548.644 kb on - strand, within BPHYT_RS22245 at 548.644 kb on - strand, within BPHYT_RS22245 at 548.644 kb on - strand, within BPHYT_RS22245 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.700 kb on + strand, within BPHYT_RS22245 at 548.701 kb on - strand, within BPHYT_RS22245 at 548.781 kb on + strand, within BPHYT_RS22245 at 548.782 kb on - strand, within BPHYT_RS22245 at 548.892 kb on - strand, within BPHYT_RS22245 at 549.367 kb on - strand, within BPHYT_RS22245 at 549.501 kb on + strand at 549.501 kb on + strand at 549.502 kb on - strand at 549.502 kb on - strand at 549.857 kb on - strand, within BPHYT_RS22250 at 550.087 kb on - strand, within BPHYT_RS22250
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 547,112 - BPHYT_RS22235 0.61 +0.4 547,217 - BPHYT_RS22235 0.69 -0.5 547,217 - BPHYT_RS22235 0.69 -0.6 547,523 + +1.7 547,524 - +0.1 547,525 + -0.7 547,526 - +0.6 547,687 - +0.7 547,690 - +1.4 547,692 + +0.1 547,693 - +0.7 547,710 - -0.2 547,745 + +0.1 547,746 - +0.8 547,814 - -0.6 547,816 + +0.7 547,816 + -0.6 547,816 + +0.4 547,816 + -0.9 547,817 - -0.3 547,972 + BPHYT_RS22240 0.29 +0.5 547,975 - BPHYT_RS22240 0.30 -0.6 547,975 - BPHYT_RS22240 0.30 -0.4 548,042 - BPHYT_RS22240 0.64 -1.9 548,086 + BPHYT_RS22240 0.86 -0.3 548,087 - BPHYT_RS22240 0.87 -0.1 548,298 + BPHYT_RS22245 0.13 -0.3 548,307 + BPHYT_RS22245 0.13 -0.0 548,338 - BPHYT_RS22245 0.15 -0.6 548,538 + BPHYT_RS22245 0.29 +0.5 548,539 - BPHYT_RS22245 0.29 -0.6 548,644 - BPHYT_RS22245 0.36 -0.5 548,644 - BPHYT_RS22245 0.36 -0.5 548,644 - BPHYT_RS22245 0.36 -0.1 548,700 + BPHYT_RS22245 0.40 -0.3 548,700 + BPHYT_RS22245 0.40 -0.3 548,700 + BPHYT_RS22245 0.40 -1.1 548,701 - BPHYT_RS22245 0.40 -1.8 548,781 + BPHYT_RS22245 0.45 -0.2 548,782 - BPHYT_RS22245 0.45 -0.2 548,892 - BPHYT_RS22245 0.53 +0.2 549,367 - BPHYT_RS22245 0.85 -0.2 549,501 + -1.6 549,501 + +0.5 549,502 - -0.3 549,502 - +0.9 549,857 - BPHYT_RS22250 0.15 -1.8 550,087 - BPHYT_RS22250 0.34 +0.2
Or see this region's nucleotide sequence