Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22135

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22130 and BPHYT_RS22135 are separated by 351 nucleotides BPHYT_RS22130: BPHYT_RS22130 - FAD-linked oxidase, at 523,184 to 524,572 _RS22130 BPHYT_RS22135: BPHYT_RS22135 - 3-ketoacyl-ACP reductase, at 524,924 to 525,685 _RS22135 Position (kb) 524 525 526Strain fitness (log2 ratio) -1 0 1at 523.933 kb on - strand, within BPHYT_RS22130at 524.110 kb on - strand, within BPHYT_RS22130at 524.702 kb on + strandat 525.579 kb on + strand, within BPHYT_RS22135at 525.721 kb on + strandat 525.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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523,933 - BPHYT_RS22130 0.54 -0.6
524,110 - BPHYT_RS22130 0.67 +0.4
524,702 + +0.1
525,579 + BPHYT_RS22135 0.86 -0.6
525,721 + -1.2
525,881 - +0.1

Or see this region's nucleotide sequence