Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21730 and BPHYT_RS21735 are separated by 42 nucleotides BPHYT_RS21735 and BPHYT_RS21740 are separated by 118 nucleotides BPHYT_RS21740 and BPHYT_RS21745 are separated by 205 nucleotides
BPHYT_RS21730: BPHYT_RS21730 - 2-aminoadipate aminotransferase, at 431,369 to 432,895
_RS21730
BPHYT_RS21735: BPHYT_RS21735 - IclR family transcriptional regulator, at 432,938 to 433,690
_RS21735
BPHYT_RS21740: BPHYT_RS21740 - IclR family transcriptional regulator, at 433,809 to 434,645
_RS21740
BPHYT_RS21745: BPHYT_RS21745 - choline dehydrogenase, at 434,851 to 436,506
_RS21745
Position (kb) 433
434
435 Strain fitness (log2 ratio) -1
0
1
2 at 433.048 kb on + strand, within BPHYT_RS21735 at 433.126 kb on + strand, within BPHYT_RS21735 at 433.350 kb on + strand, within BPHYT_RS21735 at 433.350 kb on + strand, within BPHYT_RS21735 at 433.351 kb on - strand, within BPHYT_RS21735 at 433.725 kb on + strand at 434.097 kb on - strand, within BPHYT_RS21740 at 434.097 kb on - strand, within BPHYT_RS21740 at 434.263 kb on + strand, within BPHYT_RS21740 at 434.263 kb on + strand, within BPHYT_RS21740 at 434.456 kb on - strand at 434.715 kb on + strand at 435.043 kb on + strand, within BPHYT_RS21745 at 435.044 kb on - strand, within BPHYT_RS21745 at 435.136 kb on + strand, within BPHYT_RS21745 at 435.137 kb on - strand, within BPHYT_RS21745 at 435.137 kb on - strand, within BPHYT_RS21745 at 435.404 kb on - strand, within BPHYT_RS21745 at 435.452 kb on - strand, within BPHYT_RS21745
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 433,048 + BPHYT_RS21735 0.15 -0.4 433,126 + BPHYT_RS21735 0.25 -0.8 433,350 + BPHYT_RS21735 0.55 +0.1 433,350 + BPHYT_RS21735 0.55 -0.9 433,351 - BPHYT_RS21735 0.55 +2.2 433,725 + +0.6 434,097 - BPHYT_RS21740 0.34 +0.4 434,097 - BPHYT_RS21740 0.34 -0.3 434,263 + BPHYT_RS21740 0.54 -0.5 434,263 + BPHYT_RS21740 0.54 -1.2 434,456 - -0.1 434,715 + -0.1 435,043 + BPHYT_RS21745 0.12 -0.4 435,044 - BPHYT_RS21745 0.12 -1.2 435,136 + BPHYT_RS21745 0.17 +0.4 435,137 - BPHYT_RS21745 0.17 +1.3 435,137 - BPHYT_RS21745 0.17 +0.2 435,404 - BPHYT_RS21745 0.33 +0.4 435,452 - BPHYT_RS21745 0.36 +0.1
Or see this region's nucleotide sequence