Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20625

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20615 and BPHYT_RS20620 are separated by 40 nucleotidesBPHYT_RS20620 and BPHYT_RS20625 are separated by 60 nucleotidesBPHYT_RS20625 and BPHYT_RS20630 are separated by 218 nucleotides BPHYT_RS20615: BPHYT_RS20615 - 2-nitropropane dioxygenase, at 183,954 to 185,054 _RS20615 BPHYT_RS20620: BPHYT_RS20620 - 4-oxalocrotonate tautomerase, at 185,095 to 185,331 _RS20620 BPHYT_RS20625: BPHYT_RS20625 - 3-oxoacyl-ACP reductase, at 185,392 to 186,102 _RS20625 BPHYT_RS20630: BPHYT_RS20630 - patatin, at 186,321 to 187,484 _RS20630 Position (kb) 185 186 187Strain fitness (log2 ratio) -1 0 1 2at 184.499 kb on + strand, within BPHYT_RS20615at 184.499 kb on + strand, within BPHYT_RS20615at 184.863 kb on + strand, within BPHYT_RS20615at 184.863 kb on + strand, within BPHYT_RS20615at 185.059 kb on - strandat 185.325 kb on + strandat 185.609 kb on + strand, within BPHYT_RS20625at 185.829 kb on - strand, within BPHYT_RS20625at 185.829 kb on - strand, within BPHYT_RS20625at 186.118 kb on + strandat 186.123 kb on - strandat 186.123 kb on - strandat 186.165 kb on + strandat 186.322 kb on + strandat 186.938 kb on - strand, within BPHYT_RS20630

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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184,499 + BPHYT_RS20615 0.50 -0.2
184,499 + BPHYT_RS20615 0.50 -0.6
184,863 + BPHYT_RS20615 0.83 -0.0
184,863 + BPHYT_RS20615 0.83 -0.2
185,059 - +2.5
185,325 + -0.4
185,609 + BPHYT_RS20625 0.31 +0.4
185,829 - BPHYT_RS20625 0.61 +1.0
185,829 - BPHYT_RS20625 0.61 -0.5
186,118 + +1.2
186,123 - +0.1
186,123 - -0.2
186,165 + +0.3
186,322 + +0.7
186,938 - BPHYT_RS20630 0.53 +0.1

Or see this region's nucleotide sequence