Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19130

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19120 and BPHYT_RS19125 overlap by 4 nucleotidesBPHYT_RS19125 and BPHYT_RS19130 overlap by 1 nucleotidesBPHYT_RS19130 and BPHYT_RS19135 are separated by 1 nucleotides BPHYT_RS19120: BPHYT_RS19120 - 3-oxoacyl-ACP synthase, at 4,290,464 to 4,291,528 _RS19120 BPHYT_RS19125: BPHYT_RS19125 - short-chain dehydrogenase, at 4,291,525 to 4,292,289 _RS19125 BPHYT_RS19130: BPHYT_RS19130 - acetyltransferase, at 4,292,289 to 4,292,921 _RS19130 BPHYT_RS19135: BPHYT_RS19135 - Rieske (2Fe-2S) protein, at 4,292,923 to 4,293,912 _RS19135 Position (kb) 4292 4293Strain fitness (log2 ratio) -2 -1 0 1at 4291.355 kb on + strand, within BPHYT_RS19120at 4291.363 kb on + strand, within BPHYT_RS19120at 4291.363 kb on + strand, within BPHYT_RS19120at 4291.786 kb on - strand, within BPHYT_RS19125at 4291.893 kb on + strand, within BPHYT_RS19125at 4291.894 kb on - strand, within BPHYT_RS19125at 4291.996 kb on + strand, within BPHYT_RS19125at 4292.276 kb on - strandat 4292.433 kb on + strand, within BPHYT_RS19130at 4292.467 kb on - strand, within BPHYT_RS19130at 4292.727 kb on + strand, within BPHYT_RS19130at 4292.727 kb on + strand, within BPHYT_RS19130at 4292.727 kb on + strand, within BPHYT_RS19130at 4292.896 kb on - strandat 4293.075 kb on + strand, within BPHYT_RS19135at 4293.076 kb on - strand, within BPHYT_RS19135at 4293.076 kb on - strand, within BPHYT_RS19135at 4293.105 kb on + strand, within BPHYT_RS19135at 4293.158 kb on - strand, within BPHYT_RS19135at 4293.295 kb on + strand, within BPHYT_RS19135at 4293.295 kb on + strand, within BPHYT_RS19135at 4293.373 kb on + strand, within BPHYT_RS19135at 4293.388 kb on + strand, within BPHYT_RS19135at 4293.389 kb on - strand, within BPHYT_RS19135at 4293.424 kb on + strand, within BPHYT_RS19135at 4293.514 kb on + strand, within BPHYT_RS19135at 4293.598 kb on + strand, within BPHYT_RS19135at 4293.598 kb on + strand, within BPHYT_RS19135at 4293.598 kb on + strand, within BPHYT_RS19135at 4293.599 kb on - strand, within BPHYT_RS19135at 4293.599 kb on - strand, within BPHYT_RS19135at 4293.600 kb on + strand, within BPHYT_RS19135at 4293.600 kb on + strand, within BPHYT_RS19135at 4293.600 kb on + strand, within BPHYT_RS19135at 4293.601 kb on - strand, within BPHYT_RS19135at 4293.601 kb on - strand, within BPHYT_RS19135at 4293.611 kb on - strand, within BPHYT_RS19135at 4293.613 kb on - strand, within BPHYT_RS19135at 4293.613 kb on - strand, within BPHYT_RS19135at 4293.613 kb on - strand, within BPHYT_RS19135at 4293.643 kb on + strand, within BPHYT_RS19135at 4293.644 kb on - strand, within BPHYT_RS19135at 4293.722 kb on - strand, within BPHYT_RS19135at 4293.722 kb on - strand, within BPHYT_RS19135at 4293.803 kb on + strand, within BPHYT_RS19135at 4293.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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4,291,355 + BPHYT_RS19120 0.84 -0.9
4,291,363 + BPHYT_RS19120 0.84 -1.4
4,291,363 + BPHYT_RS19120 0.84 -1.2
4,291,786 - BPHYT_RS19125 0.34 -0.6
4,291,893 + BPHYT_RS19125 0.48 -1.9
4,291,894 - BPHYT_RS19125 0.48 +0.5
4,291,996 + BPHYT_RS19125 0.62 -0.3
4,292,276 - -1.5
4,292,433 + BPHYT_RS19130 0.23 -1.2
4,292,467 - BPHYT_RS19130 0.28 -1.7
4,292,727 + BPHYT_RS19130 0.69 -1.7
4,292,727 + BPHYT_RS19130 0.69 -1.2
4,292,727 + BPHYT_RS19130 0.69 -1.7
4,292,896 - -1.8
4,293,075 + BPHYT_RS19135 0.15 +0.2
4,293,076 - BPHYT_RS19135 0.15 +0.4
4,293,076 - BPHYT_RS19135 0.15 -0.3
4,293,105 + BPHYT_RS19135 0.18 -0.2
4,293,158 - BPHYT_RS19135 0.24 +1.2
4,293,295 + BPHYT_RS19135 0.38 +0.4
4,293,295 + BPHYT_RS19135 0.38 -0.6
4,293,373 + BPHYT_RS19135 0.45 +1.0
4,293,388 + BPHYT_RS19135 0.47 +0.5
4,293,389 - BPHYT_RS19135 0.47 -0.7
4,293,424 + BPHYT_RS19135 0.51 +0.1
4,293,514 + BPHYT_RS19135 0.60 -0.5
4,293,598 + BPHYT_RS19135 0.68 -0.1
4,293,598 + BPHYT_RS19135 0.68 -0.1
4,293,598 + BPHYT_RS19135 0.68 +0.1
4,293,599 - BPHYT_RS19135 0.68 +0.6
4,293,599 - BPHYT_RS19135 0.68 +1.4
4,293,600 + BPHYT_RS19135 0.68 +1.1
4,293,600 + BPHYT_RS19135 0.68 +0.5
4,293,600 + BPHYT_RS19135 0.68 -0.1
4,293,601 - BPHYT_RS19135 0.68 -0.5
4,293,601 - BPHYT_RS19135 0.68 -1.7
4,293,611 - BPHYT_RS19135 0.69 -0.3
4,293,613 - BPHYT_RS19135 0.70 +0.3
4,293,613 - BPHYT_RS19135 0.70 +0.0
4,293,613 - BPHYT_RS19135 0.70 -0.3
4,293,643 + BPHYT_RS19135 0.73 -1.1
4,293,644 - BPHYT_RS19135 0.73 +0.0
4,293,722 - BPHYT_RS19135 0.81 +0.3
4,293,722 - BPHYT_RS19135 0.81 +0.0
4,293,803 + BPHYT_RS19135 0.89 +0.9
4,293,872 - +1.5

Or see this region's nucleotide sequence