Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13115

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS13110 and BPHYT_RS13115 overlap by 4 nucleotidesBPHYT_RS13115 and BPHYT_RS13120 are separated by 47 nucleotidesBPHYT_RS13120 and BPHYT_RS13125 overlap by 4 nucleotides BPHYT_RS13110: BPHYT_RS13110 - ABC transporter substrate-binding protein, at 2,995,782 to 2,996,870 _RS13110 BPHYT_RS13115: BPHYT_RS13115 - ABC transporter permease, at 2,996,867 to 2,997,691 _RS13115 BPHYT_RS13120: BPHYT_RS13120 - ABC transporter permease, at 2,997,739 to 2,998,641 _RS13120 BPHYT_RS13125: BPHYT_RS13125 - ABC transporter ATP-binding protein, at 2,998,638 to 2,999,684 _RS13125 Position (kb) 2996 2997 2998Strain fitness (log2 ratio) -1 0 1 2at 2996.103 kb on + strand, within BPHYT_RS13110at 2996.104 kb on - strand, within BPHYT_RS13110at 2996.104 kb on - strand, within BPHYT_RS13110at 2996.158 kb on - strand, within BPHYT_RS13110at 2996.211 kb on + strand, within BPHYT_RS13110at 2996.317 kb on - strand, within BPHYT_RS13110at 2996.484 kb on + strand, within BPHYT_RS13110at 2996.485 kb on - strand, within BPHYT_RS13110at 2996.784 kb on + strandat 2997.029 kb on + strand, within BPHYT_RS13115at 2997.030 kb on - strand, within BPHYT_RS13115at 2997.560 kb on + strand, within BPHYT_RS13115at 2997.560 kb on + strand, within BPHYT_RS13115at 2997.561 kb on - strand, within BPHYT_RS13115at 2997.910 kb on + strand, within BPHYT_RS13120at 2997.910 kb on + strand, within BPHYT_RS13120at 2997.971 kb on - strand, within BPHYT_RS13120at 2998.160 kb on - strand, within BPHYT_RS13120at 2998.475 kb on - strand, within BPHYT_RS13120at 2998.475 kb on - strand, within BPHYT_RS13120at 2998.542 kb on - strand, within BPHYT_RS13120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
remove
2,996,103 + BPHYT_RS13110 0.29 +0.5
2,996,104 - BPHYT_RS13110 0.30 +1.1
2,996,104 - BPHYT_RS13110 0.30 -0.3
2,996,158 - BPHYT_RS13110 0.35 +0.0
2,996,211 + BPHYT_RS13110 0.39 +0.9
2,996,317 - BPHYT_RS13110 0.49 -0.2
2,996,484 + BPHYT_RS13110 0.64 -0.1
2,996,485 - BPHYT_RS13110 0.65 +0.3
2,996,784 + -0.0
2,997,029 + BPHYT_RS13115 0.20 +0.9
2,997,030 - BPHYT_RS13115 0.20 -0.1
2,997,560 + BPHYT_RS13115 0.84 -0.5
2,997,560 + BPHYT_RS13115 0.84 +1.1
2,997,561 - BPHYT_RS13115 0.84 +0.9
2,997,910 + BPHYT_RS13120 0.19 +0.2
2,997,910 + BPHYT_RS13120 0.19 -0.5
2,997,971 - BPHYT_RS13120 0.26 +1.6
2,998,160 - BPHYT_RS13120 0.47 +0.4
2,998,475 - BPHYT_RS13120 0.82 -0.6
2,998,475 - BPHYT_RS13120 0.82 +1.9
2,998,542 - BPHYT_RS13120 0.89 -0.2

Or see this region's nucleotide sequence