Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12420

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12415 and BPHYT_RS12420 are separated by 47 nucleotidesBPHYT_RS12420 and BPHYT_RS12425 are separated by 123 nucleotides BPHYT_RS12415: BPHYT_RS12415 - tRNA(Ile)-lysidine synthetase, at 2,830,462 to 2,831,907 _RS12415 BPHYT_RS12420: BPHYT_RS12420 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, at 2,831,955 to 2,832,926 _RS12420 BPHYT_RS12425: BPHYT_RS12425 - DNA repair protein, at 2,833,050 to 2,834,099 _RS12425 Position (kb) 2831 2832 2833Strain fitness (log2 ratio) -1 0 1at 2832.965 kb on - strandat 2832.965 kb on - strandat 2833.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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2,832,965 - +0.2
2,832,965 - +0.6
2,833,014 - -0.5

Or see this region's nucleotide sequence