Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS08710 and BPHYT_RS08715 overlap by 4 nucleotides BPHYT_RS08715 and BPHYT_RS08720 are separated by 150 nucleotides BPHYT_RS08720 and BPHYT_RS08725 are separated by 60 nucleotides BPHYT_RS08725 and BPHYT_RS08730 are separated by 206 nucleotides BPHYT_RS08730 and BPHYT_RS08735 are separated by 170 nucleotides
BPHYT_RS08710: BPHYT_RS08710 - hypothetical protein, at 1,977,495 to 1,979,087
_RS08710
BPHYT_RS08715: BPHYT_RS08715 - adenylyl-sulfate kinase, at 1,979,084 to 1,979,623
_RS08715
BPHYT_RS08720: BPHYT_RS08720 - membrane protein, at 1,979,774 to 1,980,400
_RS08720
BPHYT_RS08725: BPHYT_RS08725 - hypothetical protein, at 1,980,461 to 1,980,706
_RS08725
BPHYT_RS08730: BPHYT_RS08730 - hypothetical protein, at 1,980,913 to 1,981,125
_RS08730
BPHYT_RS08735: BPHYT_RS08735 - aldo-keto reductase, at 1,981,296 to 1,982,348
_RS08735
Position (kb) 1979
1980
1981 Strain fitness (log2 ratio) -1
0
1
2 at 1978.801 kb on - strand, within BPHYT_RS08710 at 1978.947 kb on + strand at 1978.948 kb on - strand at 1979.422 kb on - strand, within BPHYT_RS08715 at 1979.457 kb on - strand, within BPHYT_RS08715 at 1980.020 kb on - strand, within BPHYT_RS08720 at 1980.239 kb on + strand, within BPHYT_RS08720 at 1980.239 kb on + strand, within BPHYT_RS08720 at 1980.239 kb on + strand, within BPHYT_RS08720 at 1980.240 kb on - strand, within BPHYT_RS08720 at 1980.240 kb on - strand, within BPHYT_RS08720 at 1980.240 kb on - strand, within BPHYT_RS08720 at 1980.366 kb on - strand at 1980.769 kb on - strand at 1980.819 kb on - strand at 1980.855 kb on - strand at 1980.855 kb on - strand at 1980.855 kb on - strand at 1981.034 kb on + strand, within BPHYT_RS08730 at 1981.035 kb on - strand, within BPHYT_RS08730 at 1981.035 kb on - strand, within BPHYT_RS08730 at 1981.035 kb on - strand, within BPHYT_RS08730 at 1981.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,978,801 - BPHYT_RS08710 0.82 +0.3 1,978,947 + +0.2 1,978,948 - +1.6 1,979,422 - BPHYT_RS08715 0.63 -1.3 1,979,457 - BPHYT_RS08715 0.69 +0.2 1,980,020 - BPHYT_RS08720 0.39 -0.5 1,980,239 + BPHYT_RS08720 0.74 -0.6 1,980,239 + BPHYT_RS08720 0.74 -1.1 1,980,239 + BPHYT_RS08720 0.74 +2.1 1,980,240 - BPHYT_RS08720 0.74 +0.6 1,980,240 - BPHYT_RS08720 0.74 -0.4 1,980,240 - BPHYT_RS08720 0.74 -0.4 1,980,366 - +0.5 1,980,769 - +0.4 1,980,819 - +0.3 1,980,855 - +1.0 1,980,855 - +0.1 1,980,855 - -0.4 1,981,034 + BPHYT_RS08730 0.57 -0.7 1,981,035 - BPHYT_RS08730 0.57 -0.2 1,981,035 - BPHYT_RS08730 0.57 -0.5 1,981,035 - BPHYT_RS08730 0.57 +0.4 1,981,208 - -0.2
Or see this region's nucleotide sequence