Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07855 and BPHYT_RS07860 overlap by 4 nucleotides BPHYT_RS07860 and BPHYT_RS07865 are separated by 38 nucleotides BPHYT_RS07865 and BPHYT_RS07870 overlap by 4 nucleotides BPHYT_RS07870 and BPHYT_RS07875 are separated by 96 nucleotides
BPHYT_RS07855: BPHYT_RS07855 - benzoate 1,2-dioxygenase subunit alpha, at 1,789,628 to 1,790,986
_RS07855
BPHYT_RS07860: BPHYT_RS07860 - benzoate 1,2-dioxygenase subunit beta, at 1,790,983 to 1,791,471
_RS07860
BPHYT_RS07865: BPHYT_RS07865 - NADH oxidase, at 1,791,510 to 1,792,532
_RS07865
BPHYT_RS07870: BPHYT_RS07870 - 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase, at 1,792,529 to 1,793,305
_RS07870
BPHYT_RS07875: BPHYT_RS07875 - CoA transferase, at 1,793,402 to 1,795,393
_RS07875
Position (kb) 1791
1792
1793 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1790.605 kb on - strand, within BPHYT_RS07855 at 1790.605 kb on - strand, within BPHYT_RS07855 at 1791.073 kb on + strand, within BPHYT_RS07860 at 1791.092 kb on - strand, within BPHYT_RS07860 at 1791.160 kb on + strand, within BPHYT_RS07860 at 1791.436 kb on + strand at 1791.436 kb on + strand at 1791.490 kb on - strand at 1791.490 kb on - strand at 1791.497 kb on + strand at 1792.309 kb on - strand, within BPHYT_RS07865 at 1792.887 kb on - strand, within BPHYT_RS07870 at 1792.986 kb on - strand, within BPHYT_RS07870 at 1793.259 kb on - strand at 1793.443 kb on - strand at 1793.443 kb on - strand at 1793.446 kb on + strand at 1793.449 kb on - strand at 1793.449 kb on - strand at 1793.449 kb on - strand at 1793.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,790,605 - BPHYT_RS07855 0.72 -1.1 1,790,605 - BPHYT_RS07855 0.72 -0.8 1,791,073 + BPHYT_RS07860 0.18 -0.8 1,791,092 - BPHYT_RS07860 0.22 +0.2 1,791,160 + BPHYT_RS07860 0.36 -2.8 1,791,436 + -0.5 1,791,436 + -0.7 1,791,490 - -0.8 1,791,490 - +0.2 1,791,497 + +1.6 1,792,309 - BPHYT_RS07865 0.78 -1.8 1,792,887 - BPHYT_RS07870 0.46 +0.1 1,792,986 - BPHYT_RS07870 0.59 -0.2 1,793,259 - +0.3 1,793,443 - -0.8 1,793,443 - +0.6 1,793,446 + -0.0 1,793,449 - -3.4 1,793,449 - -0.9 1,793,449 - +0.3 1,793,449 - -0.1
Or see this region's nucleotide sequence