Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07565 and BPHYT_RS07570 are separated by 17 nucleotides BPHYT_RS07570 and BPHYT_RS07575 are separated by 85 nucleotides BPHYT_RS07575 and BPHYT_RS07580 are separated by 8 nucleotides
BPHYT_RS07565: BPHYT_RS07565 - urocanate hydratase, at 1,719,514 to 1,721,202
_RS07565
BPHYT_RS07570: BPHYT_RS07570 - hypothetical protein, at 1,721,220 to 1,721,846
_RS07570
BPHYT_RS07575: BPHYT_RS07575 - imidazolonepropionase, at 1,721,932 to 1,723,155
_RS07575
BPHYT_RS07580: BPHYT_RS07580 - N-formimino-L-glutamate deiminase, at 1,723,164 to 1,724,570
_RS07580
Position (kb) 1721
1722
1723
1724 Strain fitness (log2 ratio) -1
0
1 at 1721.636 kb on - strand, within BPHYT_RS07570 at 1722.197 kb on - strand, within BPHYT_RS07575 at 1722.484 kb on + strand, within BPHYT_RS07575 at 1722.485 kb on - strand, within BPHYT_RS07575 at 1722.486 kb on + strand, within BPHYT_RS07575 at 1722.790 kb on + strand, within BPHYT_RS07575 at 1722.790 kb on + strand, within BPHYT_RS07575 at 1722.791 kb on - strand, within BPHYT_RS07575 at 1722.791 kb on - strand, within BPHYT_RS07575 at 1722.838 kb on + strand, within BPHYT_RS07575 at 1723.132 kb on + strand at 1723.215 kb on + strand at 1723.515 kb on + strand, within BPHYT_RS07580 at 1723.515 kb on + strand, within BPHYT_RS07580 at 1723.677 kb on + strand, within BPHYT_RS07580 at 1723.857 kb on - strand, within BPHYT_RS07580 at 1723.857 kb on - strand, within BPHYT_RS07580
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,721,636 - BPHYT_RS07570 0.66 -0.1 1,722,197 - BPHYT_RS07575 0.22 +1.0 1,722,484 + BPHYT_RS07575 0.45 -0.4 1,722,485 - BPHYT_RS07575 0.45 +1.1 1,722,486 + BPHYT_RS07575 0.45 +1.4 1,722,790 + BPHYT_RS07575 0.70 +0.9 1,722,790 + BPHYT_RS07575 0.70 -0.2 1,722,791 - BPHYT_RS07575 0.70 +1.3 1,722,791 - BPHYT_RS07575 0.70 +0.4 1,722,838 + BPHYT_RS07575 0.74 +0.9 1,723,132 + -0.5 1,723,215 + -1.7 1,723,515 + BPHYT_RS07580 0.25 +0.4 1,723,515 + BPHYT_RS07580 0.25 +0.9 1,723,677 + BPHYT_RS07580 0.36 -0.1 1,723,857 - BPHYT_RS07580 0.49 +0.7 1,723,857 - BPHYT_RS07580 0.49 +1.5
Or see this region's nucleotide sequence