Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07405 and BPHYT_RS07410 are separated by 63 nucleotides BPHYT_RS07410 and BPHYT_RS07415 are separated by 391 nucleotides BPHYT_RS07415 and BPHYT_RS07420 overlap by 1 nucleotides
BPHYT_RS07405: BPHYT_RS07405 - UDP-glucose 4-epimerase, at 1,683,801 to 1,684,823
_RS07405
BPHYT_RS07410: BPHYT_RS07410 - glucosamine--fructose-6-phosphate aminotransferase, at 1,684,887 to 1,686,704
_RS07410
BPHYT_RS07415: BPHYT_RS07415 - hypothetical protein, at 1,687,096 to 1,687,419
_RS07415
BPHYT_RS07420: BPHYT_RS07420 - hypothetical protein, at 1,687,419 to 1,687,637
_RS07420
Position (kb) 1684
1685
1686
1687 Strain fitness (log2 ratio) -1
0
1 at 1684.194 kb on + strand, within BPHYT_RS07405 at 1684.416 kb on + strand, within BPHYT_RS07405 at 1684.609 kb on - strand, within BPHYT_RS07405 at 1684.610 kb on + strand, within BPHYT_RS07405 at 1684.610 kb on + strand, within BPHYT_RS07405 at 1684.822 kb on - strand at 1685.570 kb on - strand, within BPHYT_RS07410 at 1686.349 kb on - strand at 1686.507 kb on + strand, within BPHYT_RS07410 at 1686.508 kb on - strand, within BPHYT_RS07410 at 1687.059 kb on - strand at 1687.138 kb on + strand, within BPHYT_RS07415 at 1687.138 kb on + strand, within BPHYT_RS07415 at 1687.138 kb on + strand, within BPHYT_RS07415 at 1687.139 kb on - strand, within BPHYT_RS07415 at 1687.435 kb on - strand at 1687.572 kb on - strand, within BPHYT_RS07420
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,684,194 + BPHYT_RS07405 0.38 -0.3 1,684,416 + BPHYT_RS07405 0.60 +1.4 1,684,609 - BPHYT_RS07405 0.79 +0.0 1,684,610 + BPHYT_RS07405 0.79 +0.6 1,684,610 + BPHYT_RS07405 0.79 +0.3 1,684,822 - +0.6 1,685,570 - BPHYT_RS07410 0.38 +0.4 1,686,349 - -0.7 1,686,507 + BPHYT_RS07410 0.89 +0.5 1,686,508 - BPHYT_RS07410 0.89 +0.9 1,687,059 - -0.1 1,687,138 + BPHYT_RS07415 0.13 +0.9 1,687,138 + BPHYT_RS07415 0.13 +1.1 1,687,138 + BPHYT_RS07415 0.13 +0.5 1,687,139 - BPHYT_RS07415 0.13 -0.1 1,687,435 - -0.8 1,687,572 - BPHYT_RS07420 0.70 -0.4
Or see this region's nucleotide sequence