Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06295 and BPHYT_RS06300 are separated by 57 nucleotides BPHYT_RS06300 and BPHYT_RS06305 are separated by 147 nucleotides BPHYT_RS06305 and BPHYT_RS06310 are separated by 298 nucleotides BPHYT_RS06310 and BPHYT_RS06315 are separated by 20 nucleotides
BPHYT_RS06295: BPHYT_RS06295 - diguanylate phosphodiesterase, at 1,434,680 to 1,436,377
_RS06295
BPHYT_RS06300: BPHYT_RS06300 - hypothetical protein, at 1,436,435 to 1,436,650
_RS06300
BPHYT_RS06305: BPHYT_RS06305 - small mechanosensitive ion channel protein MscS, at 1,436,798 to 1,437,607
_RS06305
BPHYT_RS06310: BPHYT_RS06310 - heme oxygenase, at 1,437,906 to 1,438,442
_RS06310
BPHYT_RS06315: BPHYT_RS06315 - histidine kinase, at 1,438,463 to 1,440,109
_RS06315
Position (kb) 1436
1437
1438 Strain fitness (log2 ratio) -1
0
1
2 at 1436.091 kb on - strand, within BPHYT_RS06295 at 1436.105 kb on + strand, within BPHYT_RS06295 at 1436.509 kb on - strand, within BPHYT_RS06300 at 1436.677 kb on + strand at 1436.772 kb on - strand at 1436.772 kb on - strand at 1436.873 kb on - strand at 1437.134 kb on - strand, within BPHYT_RS06305 at 1437.730 kb on - strand at 1438.161 kb on + strand, within BPHYT_RS06310 at 1438.179 kb on + strand, within BPHYT_RS06310 at 1438.218 kb on + strand, within BPHYT_RS06310 at 1438.218 kb on + strand, within BPHYT_RS06310 at 1438.462 kb on + strand at 1438.463 kb on - strand at 1438.463 kb on - strand at 1438.544 kb on + strand at 1438.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,436,091 - BPHYT_RS06295 0.83 +2.7 1,436,105 + BPHYT_RS06295 0.84 -1.5 1,436,509 - BPHYT_RS06300 0.34 +1.0 1,436,677 + +0.4 1,436,772 - -0.8 1,436,772 - +0.2 1,436,873 - +0.1 1,437,134 - BPHYT_RS06305 0.41 +0.7 1,437,730 - -0.4 1,438,161 + BPHYT_RS06310 0.47 +0.1 1,438,179 + BPHYT_RS06310 0.51 -0.3 1,438,218 + BPHYT_RS06310 0.58 +0.8 1,438,218 + BPHYT_RS06310 0.58 -0.6 1,438,462 + +0.2 1,438,463 - +1.0 1,438,463 - +0.6 1,438,544 + +0.8 1,438,545 - +0.0
Or see this region's nucleotide sequence