Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06285 and BPHYT_RS06290 are separated by 49 nucleotides BPHYT_RS06290 and BPHYT_RS06295 are separated by 214 nucleotides BPHYT_RS06295 and BPHYT_RS06300 are separated by 57 nucleotides BPHYT_RS06300 and BPHYT_RS06305 are separated by 147 nucleotides
BPHYT_RS06285: BPHYT_RS06285 - diguanylate cyclase, at 1,433,556 to 1,434,056
_RS06285
BPHYT_RS06290: BPHYT_RS06290 - hypothetical protein, at 1,434,106 to 1,434,465
_RS06290
BPHYT_RS06295: BPHYT_RS06295 - diguanylate phosphodiesterase, at 1,434,680 to 1,436,377
_RS06295
BPHYT_RS06300: BPHYT_RS06300 - hypothetical protein, at 1,436,435 to 1,436,650
_RS06300
BPHYT_RS06305: BPHYT_RS06305 - small mechanosensitive ion channel protein MscS, at 1,436,798 to 1,437,607
_RS06305
Position (kb) 1434
1435
1436
1437 Strain fitness (log2 ratio) -1
0
1
2 at 1433.725 kb on - strand, within BPHYT_RS06285 at 1433.739 kb on - strand, within BPHYT_RS06285 at 1434.014 kb on - strand at 1434.101 kb on + strand at 1434.429 kb on - strand, within BPHYT_RS06290 at 1434.492 kb on + strand at 1434.564 kb on + strand at 1435.031 kb on + strand, within BPHYT_RS06295 at 1435.032 kb on - strand, within BPHYT_RS06295 at 1435.089 kb on - strand, within BPHYT_RS06295 at 1435.664 kb on + strand, within BPHYT_RS06295 at 1435.697 kb on - strand, within BPHYT_RS06295 at 1436.091 kb on - strand, within BPHYT_RS06295 at 1436.105 kb on + strand, within BPHYT_RS06295 at 1436.509 kb on - strand, within BPHYT_RS06300 at 1436.677 kb on + strand at 1436.772 kb on - strand at 1436.772 kb on - strand at 1436.873 kb on - strand at 1437.134 kb on - strand, within BPHYT_RS06305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,433,725 - BPHYT_RS06285 0.34 +1.2 1,433,739 - BPHYT_RS06285 0.37 -0.6 1,434,014 - -0.2 1,434,101 + -0.1 1,434,429 - BPHYT_RS06290 0.90 +1.1 1,434,492 + -1.6 1,434,564 + +0.7 1,435,031 + BPHYT_RS06295 0.21 +0.4 1,435,032 - BPHYT_RS06295 0.21 -1.2 1,435,089 - BPHYT_RS06295 0.24 -0.7 1,435,664 + BPHYT_RS06295 0.58 +0.5 1,435,697 - BPHYT_RS06295 0.60 +0.4 1,436,091 - BPHYT_RS06295 0.83 +2.7 1,436,105 + BPHYT_RS06295 0.84 -1.5 1,436,509 - BPHYT_RS06300 0.34 +1.0 1,436,677 + +0.4 1,436,772 - -0.8 1,436,772 - +0.2 1,436,873 - +0.1 1,437,134 - BPHYT_RS06305 0.41 +0.7
Or see this region's nucleotide sequence