Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06275 and BPHYT_RS06280 are separated by 265 nucleotides BPHYT_RS06280 and BPHYT_RS06285 are separated by 178 nucleotides BPHYT_RS06285 and BPHYT_RS06290 are separated by 49 nucleotides BPHYT_RS06290 and BPHYT_RS06295 are separated by 214 nucleotides
BPHYT_RS06275: BPHYT_RS06275 - hydrolase, at 1,431,091 to 1,432,686
_RS06275
BPHYT_RS06280: BPHYT_RS06280 - transporter, at 1,432,952 to 1,433,377
_RS06280
BPHYT_RS06285: BPHYT_RS06285 - diguanylate cyclase, at 1,433,556 to 1,434,056
_RS06285
BPHYT_RS06290: BPHYT_RS06290 - hypothetical protein, at 1,434,106 to 1,434,465
_RS06290
BPHYT_RS06295: BPHYT_RS06295 - diguanylate phosphodiesterase, at 1,434,680 to 1,436,377
_RS06295
Position (kb) 1433
1434
1435 Strain fitness (log2 ratio) -1
0
1 at 1432.781 kb on - strand at 1432.781 kb on - strand at 1432.787 kb on + strand at 1433.241 kb on + strand, within BPHYT_RS06280 at 1433.375 kb on + strand at 1433.375 kb on + strand at 1433.376 kb on - strand at 1433.386 kb on + strand at 1433.387 kb on - strand at 1433.725 kb on - strand, within BPHYT_RS06285 at 1433.739 kb on - strand, within BPHYT_RS06285 at 1434.014 kb on - strand at 1434.101 kb on + strand at 1434.429 kb on - strand, within BPHYT_RS06290 at 1434.492 kb on + strand at 1434.564 kb on + strand at 1435.031 kb on + strand, within BPHYT_RS06295 at 1435.032 kb on - strand, within BPHYT_RS06295
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,432,781 - +0.6 1,432,781 - -0.2 1,432,787 + -0.7 1,433,241 + BPHYT_RS06280 0.68 +0.1 1,433,375 + +0.1 1,433,375 + +0.4 1,433,376 - -0.3 1,433,386 + +0.3 1,433,387 - -0.1 1,433,725 - BPHYT_RS06285 0.34 +1.2 1,433,739 - BPHYT_RS06285 0.37 -0.6 1,434,014 - -0.2 1,434,101 + -0.1 1,434,429 - BPHYT_RS06290 0.90 +1.1 1,434,492 + -1.6 1,434,564 + +0.7 1,435,031 + BPHYT_RS06295 0.21 +0.4 1,435,032 - BPHYT_RS06295 0.21 -1.2
Or see this region's nucleotide sequence