Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05935 and BPHYT_RS05940 are separated by 273 nucleotides BPHYT_RS05940 and BPHYT_RS05945 are separated by 103 nucleotides BPHYT_RS05945 and BPHYT_RS05950 are separated by 165 nucleotides
BPHYT_RS05935: BPHYT_RS05935 - DNA topoisomerase IV subunit A, at 1,348,030 to 1,350,354
_RS05935
BPHYT_RS05940: BPHYT_RS05940 - membrane protein, at 1,350,628 to 1,351,086
_RS05940
BPHYT_RS05945: BPHYT_RS05945 - chromate transporter, at 1,351,190 to 1,352,398
_RS05945
BPHYT_RS05950: BPHYT_RS05950 - dGTP triphosphohydrolase, at 1,352,564 to 1,354,918
_RS05950
Position (kb) 1351
1352
1353 Strain fitness (log2 ratio) -1
0
1
2 at 1350.389 kb on + strand at 1350.390 kb on - strand at 1350.395 kb on - strand at 1350.472 kb on + strand at 1350.472 kb on + strand at 1350.543 kb on + strand at 1350.544 kb on - strand at 1350.749 kb on + strand, within BPHYT_RS05940 at 1350.750 kb on - strand, within BPHYT_RS05940 at 1350.927 kb on + strand, within BPHYT_RS05940 at 1351.254 kb on + strand at 1351.254 kb on + strand at 1351.311 kb on + strand, within BPHYT_RS05945 at 1351.311 kb on + strand, within BPHYT_RS05945 at 1351.878 kb on + strand, within BPHYT_RS05945 at 1351.899 kb on + strand, within BPHYT_RS05945 at 1351.899 kb on + strand, within BPHYT_RS05945 at 1351.900 kb on - strand, within BPHYT_RS05945 at 1351.972 kb on + strand, within BPHYT_RS05945 at 1351.975 kb on - strand, within BPHYT_RS05945 at 1352.064 kb on + strand, within BPHYT_RS05945 at 1352.262 kb on + strand, within BPHYT_RS05945 at 1352.428 kb on + strand at 1353.288 kb on - strand, within BPHYT_RS05950 at 1353.288 kb on - strand, within BPHYT_RS05950 at 1353.342 kb on + strand, within BPHYT_RS05950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,350,389 + +0.9 1,350,390 - +0.5 1,350,395 - +0.4 1,350,472 + +0.2 1,350,472 + +1.1 1,350,543 + +1.1 1,350,544 - -0.4 1,350,749 + BPHYT_RS05940 0.26 +0.4 1,350,750 - BPHYT_RS05940 0.27 +0.7 1,350,927 + BPHYT_RS05940 0.65 +0.0 1,351,254 + -0.9 1,351,254 + +1.1 1,351,311 + BPHYT_RS05945 0.10 -0.4 1,351,311 + BPHYT_RS05945 0.10 +0.7 1,351,878 + BPHYT_RS05945 0.57 +0.6 1,351,899 + BPHYT_RS05945 0.59 +1.9 1,351,899 + BPHYT_RS05945 0.59 -0.4 1,351,900 - BPHYT_RS05945 0.59 +0.8 1,351,972 + BPHYT_RS05945 0.65 -0.6 1,351,975 - BPHYT_RS05945 0.65 +1.1 1,352,064 + BPHYT_RS05945 0.72 +0.4 1,352,262 + BPHYT_RS05945 0.89 -0.1 1,352,428 + -1.1 1,353,288 - BPHYT_RS05950 0.31 +0.7 1,353,288 - BPHYT_RS05950 0.31 +0.6 1,353,342 + BPHYT_RS05950 0.33 +0.4
Or see this region's nucleotide sequence