Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05855 and BPHYT_RS05860 overlap by 76 nucleotides BPHYT_RS05860 and BPHYT_RS05865 are separated by 2 nucleotides BPHYT_RS05865 and BPHYT_RS05870 are separated by 138 nucleotides BPHYT_RS05870 and BPHYT_RS05875 are separated by 245 nucleotides
BPHYT_RS05855: BPHYT_RS05855 - restriction endonuclease subunit M, at 1,330,442 to 1,331,176
_RS05855
BPHYT_RS05860: BPHYT_RS05860 - ATP-binding protein, at 1,331,101 to 1,331,889
_RS05860
BPHYT_RS05865: BPHYT_RS05865 - integrase, at 1,331,892 to 1,333,418
_RS05865
BPHYT_RS05870: BPHYT_RS05870 - hypothetical protein, at 1,333,557 to 1,333,856
_RS05870
BPHYT_RS05875: BPHYT_RS05875 - acyltransferase, at 1,334,102 to 1,335,166
_RS05875
Position (kb) 1331
1332
1333
1334 Strain fitness (log2 ratio) -1
0
1
2
3 at 1330.895 kb on - strand, within BPHYT_RS05855 at 1330.952 kb on - strand, within BPHYT_RS05855 at 1330.977 kb on - strand, within BPHYT_RS05855 at 1331.012 kb on + strand, within BPHYT_RS05855 at 1331.012 kb on + strand, within BPHYT_RS05855 at 1333.638 kb on + strand, within BPHYT_RS05870 at 1333.647 kb on + strand, within BPHYT_RS05870 at 1333.647 kb on + strand, within BPHYT_RS05870 at 1333.648 kb on - strand, within BPHYT_RS05870 at 1333.648 kb on - strand, within BPHYT_RS05870 at 1333.850 kb on - strand at 1334.145 kb on - strand at 1334.266 kb on + strand, within BPHYT_RS05875 at 1334.361 kb on - strand, within BPHYT_RS05875
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,330,895 - BPHYT_RS05855 0.62 -0.2 1,330,952 - BPHYT_RS05855 0.69 +1.3 1,330,977 - BPHYT_RS05855 0.73 -0.9 1,331,012 + BPHYT_RS05855 0.78 -0.1 1,331,012 + BPHYT_RS05855 0.78 +0.3 1,333,638 + BPHYT_RS05870 0.27 -0.5 1,333,647 + BPHYT_RS05870 0.30 +3.0 1,333,647 + BPHYT_RS05870 0.30 +0.4 1,333,648 - BPHYT_RS05870 0.30 -0.7 1,333,648 - BPHYT_RS05870 0.30 +0.6 1,333,850 - -0.4 1,334,145 - -0.9 1,334,266 + BPHYT_RS05875 0.15 +0.8 1,334,361 - BPHYT_RS05875 0.24 -0.8
Or see this region's nucleotide sequence