Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04530 and BPHYT_RS04535 are separated by 54 nucleotides BPHYT_RS04535 and BPHYT_RS04540 are separated by 166 nucleotides
BPHYT_RS04530: BPHYT_RS04530 - acyltransferase, at 1,045,319 to 1,046,404
_RS04530
BPHYT_RS04535: BPHYT_RS04535 - hypothetical protein, at 1,046,459 to 1,048,156
_RS04535
BPHYT_RS04540: BPHYT_RS04540 - type VI secretion protein VasK, at 1,048,323 to 1,052,312
_RS04540
Position (kb) 1046
1047
1048
1049 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.605 kb on - strand, within BPHYT_RS04530 at 1045.605 kb on - strand, within BPHYT_RS04530 at 1045.693 kb on - strand, within BPHYT_RS04530 at 1045.770 kb on + strand, within BPHYT_RS04530 at 1046.127 kb on - strand, within BPHYT_RS04530 at 1046.142 kb on + strand, within BPHYT_RS04530 at 1046.463 kb on - strand at 1046.730 kb on + strand, within BPHYT_RS04535 at 1046.889 kb on + strand, within BPHYT_RS04535 at 1046.892 kb on + strand, within BPHYT_RS04535 at 1046.955 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.132 kb on - strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.262 kb on + strand, within BPHYT_RS04535 at 1047.266 kb on - strand, within BPHYT_RS04535 at 1047.288 kb on + strand, within BPHYT_RS04535 at 1047.289 kb on - strand, within BPHYT_RS04535 at 1047.289 kb on - strand, within BPHYT_RS04535 at 1047.486 kb on + strand, within BPHYT_RS04535 at 1047.618 kb on + strand, within BPHYT_RS04535 at 1047.619 kb on - strand, within BPHYT_RS04535 at 1047.622 kb on + strand, within BPHYT_RS04535 at 1047.622 kb on + strand, within BPHYT_RS04535 at 1047.623 kb on - strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.727 kb on + strand, within BPHYT_RS04535 at 1047.891 kb on - strand, within BPHYT_RS04535 at 1048.194 kb on - strand at 1048.194 kb on - strand at 1048.233 kb on - strand at 1048.267 kb on + strand at 1048.699 kb on + strand at 1048.895 kb on - strand, within BPHYT_RS04540 at 1049.032 kb on + strand, within BPHYT_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,045,575 + BPHYT_RS04530 0.24 -1.9 1,045,575 + BPHYT_RS04530 0.24 +0.3 1,045,575 + BPHYT_RS04530 0.24 -0.3 1,045,576 - BPHYT_RS04530 0.24 -0.7 1,045,576 - BPHYT_RS04530 0.24 -0.6 1,045,576 - BPHYT_RS04530 0.24 +2.5 1,045,605 - BPHYT_RS04530 0.26 +1.1 1,045,605 - BPHYT_RS04530 0.26 +1.3 1,045,693 - BPHYT_RS04530 0.34 -0.4 1,045,770 + BPHYT_RS04530 0.42 -0.1 1,046,127 - BPHYT_RS04530 0.74 +0.1 1,046,142 + BPHYT_RS04530 0.76 +1.1 1,046,463 - +0.1 1,046,730 + BPHYT_RS04535 0.16 +2.4 1,046,889 + BPHYT_RS04535 0.25 +1.0 1,046,892 + BPHYT_RS04535 0.26 +0.7 1,046,955 + BPHYT_RS04535 0.29 -0.5 1,047,067 + BPHYT_RS04535 0.36 +0.3 1,047,067 + BPHYT_RS04535 0.36 +0.7 1,047,067 + BPHYT_RS04535 0.36 +0.7 1,047,132 - BPHYT_RS04535 0.40 +0.6 1,047,153 + BPHYT_RS04535 0.41 -0.2 1,047,153 + BPHYT_RS04535 0.41 +0.4 1,047,153 + BPHYT_RS04535 0.41 +1.4 1,047,153 + BPHYT_RS04535 0.41 -0.3 1,047,262 + BPHYT_RS04535 0.47 +0.2 1,047,266 - BPHYT_RS04535 0.48 +0.1 1,047,288 + BPHYT_RS04535 0.49 +0.4 1,047,289 - BPHYT_RS04535 0.49 +1.3 1,047,289 - BPHYT_RS04535 0.49 -0.2 1,047,486 + BPHYT_RS04535 0.60 -1.0 1,047,618 + BPHYT_RS04535 0.68 +0.9 1,047,619 - BPHYT_RS04535 0.68 +1.5 1,047,622 + BPHYT_RS04535 0.68 +0.9 1,047,622 + BPHYT_RS04535 0.68 +1.3 1,047,623 - BPHYT_RS04535 0.69 +0.0 1,047,727 + BPHYT_RS04535 0.75 +0.2 1,047,727 + BPHYT_RS04535 0.75 +1.1 1,047,727 + BPHYT_RS04535 0.75 +0.3 1,047,891 - BPHYT_RS04535 0.84 +0.4 1,048,194 - -0.4 1,048,194 - +0.5 1,048,233 - -0.5 1,048,267 + -0.2 1,048,699 + +1.2 1,048,895 - BPHYT_RS04540 0.14 +0.6 1,049,032 + BPHYT_RS04540 0.18 +1.2
Or see this region's nucleotide sequence