Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04525 and BPHYT_RS04530 are separated by 251 nucleotides BPHYT_RS04530 and BPHYT_RS04535 are separated by 54 nucleotides
BPHYT_RS04525: BPHYT_RS04525 - amino acid ABC transporter substrate-binding protein, at 1,044,264 to 1,045,067
_RS04525
BPHYT_RS04530: BPHYT_RS04530 - acyltransferase, at 1,045,319 to 1,046,404
_RS04530
BPHYT_RS04535: BPHYT_RS04535 - hypothetical protein, at 1,046,459 to 1,048,156
_RS04535
Position (kb) 1045
1046
1047 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1044.682 kb on + strand, within BPHYT_RS04525 at 1044.683 kb on - strand, within BPHYT_RS04525 at 1044.685 kb on + strand, within BPHYT_RS04525 at 1044.969 kb on - strand, within BPHYT_RS04525 at 1045.147 kb on + strand at 1045.452 kb on + strand, within BPHYT_RS04530 at 1045.452 kb on + strand, within BPHYT_RS04530 at 1045.452 kb on + strand, within BPHYT_RS04530 at 1045.452 kb on + strand, within BPHYT_RS04530 at 1045.453 kb on - strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.575 kb on + strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.576 kb on - strand, within BPHYT_RS04530 at 1045.605 kb on - strand, within BPHYT_RS04530 at 1045.605 kb on - strand, within BPHYT_RS04530 at 1045.693 kb on - strand, within BPHYT_RS04530 at 1045.770 kb on + strand, within BPHYT_RS04530 at 1046.127 kb on - strand, within BPHYT_RS04530 at 1046.142 kb on + strand, within BPHYT_RS04530 at 1046.463 kb on - strand at 1046.730 kb on + strand, within BPHYT_RS04535 at 1046.889 kb on + strand, within BPHYT_RS04535 at 1046.892 kb on + strand, within BPHYT_RS04535 at 1046.955 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.067 kb on + strand, within BPHYT_RS04535 at 1047.132 kb on - strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.153 kb on + strand, within BPHYT_RS04535 at 1047.262 kb on + strand, within BPHYT_RS04535 at 1047.266 kb on - strand, within BPHYT_RS04535 at 1047.288 kb on + strand, within BPHYT_RS04535 at 1047.289 kb on - strand, within BPHYT_RS04535 at 1047.289 kb on - strand, within BPHYT_RS04535
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 1,044,682 + BPHYT_RS04525 0.52 +0.7 1,044,683 - BPHYT_RS04525 0.52 -0.1 1,044,685 + BPHYT_RS04525 0.52 +0.5 1,044,969 - BPHYT_RS04525 0.88 +0.6 1,045,147 + -0.0 1,045,452 + BPHYT_RS04530 0.12 -0.0 1,045,452 + BPHYT_RS04530 0.12 +0.9 1,045,452 + BPHYT_RS04530 0.12 +0.3 1,045,452 + BPHYT_RS04530 0.12 +0.3 1,045,453 - BPHYT_RS04530 0.12 -0.9 1,045,575 + BPHYT_RS04530 0.24 -1.9 1,045,575 + BPHYT_RS04530 0.24 +0.3 1,045,575 + BPHYT_RS04530 0.24 -0.3 1,045,576 - BPHYT_RS04530 0.24 -0.7 1,045,576 - BPHYT_RS04530 0.24 -0.6 1,045,576 - BPHYT_RS04530 0.24 +2.5 1,045,605 - BPHYT_RS04530 0.26 +1.1 1,045,605 - BPHYT_RS04530 0.26 +1.3 1,045,693 - BPHYT_RS04530 0.34 -0.4 1,045,770 + BPHYT_RS04530 0.42 -0.1 1,046,127 - BPHYT_RS04530 0.74 +0.1 1,046,142 + BPHYT_RS04530 0.76 +1.1 1,046,463 - +0.1 1,046,730 + BPHYT_RS04535 0.16 +2.4 1,046,889 + BPHYT_RS04535 0.25 +1.0 1,046,892 + BPHYT_RS04535 0.26 +0.7 1,046,955 + BPHYT_RS04535 0.29 -0.5 1,047,067 + BPHYT_RS04535 0.36 +0.3 1,047,067 + BPHYT_RS04535 0.36 +0.7 1,047,067 + BPHYT_RS04535 0.36 +0.7 1,047,132 - BPHYT_RS04535 0.40 +0.6 1,047,153 + BPHYT_RS04535 0.41 -0.2 1,047,153 + BPHYT_RS04535 0.41 +0.4 1,047,153 + BPHYT_RS04535 0.41 +1.4 1,047,153 + BPHYT_RS04535 0.41 -0.3 1,047,262 + BPHYT_RS04535 0.47 +0.2 1,047,266 - BPHYT_RS04535 0.48 +0.1 1,047,288 + BPHYT_RS04535 0.49 +0.4 1,047,289 - BPHYT_RS04535 0.49 +1.3 1,047,289 - BPHYT_RS04535 0.49 -0.2
Or see this region's nucleotide sequence