Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04455

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04450 and BPHYT_RS04455 are separated by 12 nucleotidesBPHYT_RS04455 and BPHYT_RS04460 are separated by 39 nucleotidesBPHYT_RS04460 and BPHYT_RS04465 overlap by 4 nucleotides BPHYT_RS04450: BPHYT_RS04450 - UDP-glucose 4-epimerase, at 1,029,314 to 1,030,336 _RS04450 BPHYT_RS04455: BPHYT_RS04455 - glycosyl transferase, at 1,030,349 to 1,031,497 _RS04455 BPHYT_RS04460: BPHYT_RS04460 - glycosyl transferase, at 1,031,537 to 1,032,367 _RS04460 BPHYT_RS04465: BPHYT_RS04465 - polysaccharide biosynthesis protein, at 1,032,364 to 1,033,626 _RS04465 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -1 0 1at 1029.528 kb on + strand, within BPHYT_RS04450at 1029.529 kb on - strand, within BPHYT_RS04450at 1029.631 kb on - strand, within BPHYT_RS04450at 1030.028 kb on - strand, within BPHYT_RS04450at 1030.036 kb on - strand, within BPHYT_RS04450at 1030.238 kb on + strandat 1030.356 kb on - strandat 1030.852 kb on - strand, within BPHYT_RS04455at 1031.043 kb on - strand, within BPHYT_RS04455

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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1,029,528 + BPHYT_RS04450 0.21 -0.5
1,029,529 - BPHYT_RS04450 0.21 +0.5
1,029,631 - BPHYT_RS04450 0.31 +0.6
1,030,028 - BPHYT_RS04450 0.70 -0.2
1,030,036 - BPHYT_RS04450 0.71 -0.0
1,030,238 + +0.9
1,030,356 - -0.1
1,030,852 - BPHYT_RS04455 0.44 -1.6
1,031,043 - BPHYT_RS04455 0.60 -0.3

Or see this region's nucleotide sequence