Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04155 and BPHYT_RS04160 are separated by 514 nucleotides BPHYT_RS04160 and BPHYT_RS04165 are separated by 217 nucleotides BPHYT_RS04165 and BPHYT_RS04170 are separated by 38 nucleotides
BPHYT_RS04155: BPHYT_RS04155 - polysaccharide deacetylase, at 953,531 to 954,415
_RS04155
BPHYT_RS04160: BPHYT_RS04160 - glycosyl transferase family 1, at 954,930 to 956,150
_RS04160
BPHYT_RS04165: BPHYT_RS04165 - hypothetical protein, at 956,368 to 956,772
_RS04165
BPHYT_RS04170: BPHYT_RS04170 - hypothetical protein, at 956,811 to 957,092
_RS04170
Position (kb) 954
955
956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.902 kb on - strand at 954.949 kb on + strand at 955.166 kb on + strand, within BPHYT_RS04160 at 955.167 kb on - strand, within BPHYT_RS04160 at 955.243 kb on - strand, within BPHYT_RS04160 at 955.310 kb on - strand, within BPHYT_RS04160 at 955.407 kb on + strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.477 kb on - strand, within BPHYT_RS04160 at 955.478 kb on + strand, within BPHYT_RS04160 at 956.049 kb on + strand at 956.064 kb on + strand at 956.169 kb on + strand at 956.191 kb on + strand at 956.191 kb on + strand at 956.192 kb on - strand at 956.192 kb on - strand at 956.240 kb on - strand at 956.287 kb on + strand at 956.405 kb on - strand at 956.527 kb on + strand, within BPHYT_RS04165 at 956.527 kb on + strand, within BPHYT_RS04165 at 956.619 kb on + strand, within BPHYT_RS04165 at 956.772 kb on + strand at 956.772 kb on + strand at 956.772 kb on + strand at 956.800 kb on - strand at 956.872 kb on - strand, within BPHYT_RS04170 at 956.968 kb on + strand, within BPHYT_RS04170 at 956.969 kb on - strand, within BPHYT_RS04170 at 957.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 954,902 - -0.4 954,949 + +0.7 955,166 + BPHYT_RS04160 0.19 -0.3 955,167 - BPHYT_RS04160 0.19 -0.7 955,243 - BPHYT_RS04160 0.26 +0.1 955,310 - BPHYT_RS04160 0.31 -0.3 955,407 + BPHYT_RS04160 0.39 -0.7 955,477 - BPHYT_RS04160 0.45 +0.5 955,477 - BPHYT_RS04160 0.45 +0.6 955,477 - BPHYT_RS04160 0.45 -2.2 955,478 + BPHYT_RS04160 0.45 -0.2 956,049 + +0.8 956,064 + +0.3 956,169 + +0.1 956,191 + -0.4 956,191 + +0.3 956,192 - -0.7 956,192 - +1.9 956,240 - +1.4 956,287 + -0.3 956,405 - -0.9 956,527 + BPHYT_RS04165 0.39 +1.3 956,527 + BPHYT_RS04165 0.39 +0.4 956,619 + BPHYT_RS04165 0.62 -0.1 956,772 + +0.1 956,772 + +0.6 956,772 + -0.7 956,800 - -0.7 956,872 - BPHYT_RS04170 0.22 -0.2 956,968 + BPHYT_RS04170 0.56 -1.1 956,969 - BPHYT_RS04170 0.56 -0.2 957,104 + -0.2
Or see this region's nucleotide sequence