Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04095 and BPHYT_RS04100 are separated by 277 nucleotides BPHYT_RS04100 and BPHYT_RS04105 overlap by 4 nucleotides BPHYT_RS04105 and BPHYT_RS04110 are separated by 24 nucleotides
BPHYT_RS04095: BPHYT_RS04095 - SAM-dependent methyltransferase PhcB, at 934,374 to 935,192
_RS04095
BPHYT_RS04100: BPHYT_RS04100 - AraC family transcriptional regulator, at 935,470 to 936,000
_RS04100
BPHYT_RS04105: BPHYT_RS04105 - glyoxalase, at 935,997 to 936,413
_RS04105
BPHYT_RS04110: BPHYT_RS04110 - beta-glucosidase, at 936,438 to 938,126
_RS04110
Position (kb) 935
936
937 Strain fitness (log2 ratio) -2
-1
0
1
2 at 934.983 kb on + strand, within BPHYT_RS04095 at 935.002 kb on - strand, within BPHYT_RS04095 at 935.285 kb on + strand at 935.285 kb on + strand at 935.369 kb on - strand at 935.433 kb on + strand at 935.724 kb on + strand, within BPHYT_RS04100 at 936.008 kb on + strand at 936.027 kb on + strand at 936.028 kb on - strand at 936.028 kb on - strand at 936.060 kb on + strand, within BPHYT_RS04105 at 936.279 kb on + strand, within BPHYT_RS04105 at 936.543 kb on + strand at 936.548 kb on - strand at 936.637 kb on + strand, within BPHYT_RS04110 at 936.702 kb on + strand, within BPHYT_RS04110 at 936.705 kb on + strand, within BPHYT_RS04110 at 936.706 kb on - strand, within BPHYT_RS04110 at 936.706 kb on - strand, within BPHYT_RS04110 at 936.776 kb on + strand, within BPHYT_RS04110 at 936.778 kb on + strand, within BPHYT_RS04110 at 936.778 kb on + strand, within BPHYT_RS04110 at 936.809 kb on - strand, within BPHYT_RS04110
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 934,983 + BPHYT_RS04095 0.74 +1.9 935,002 - BPHYT_RS04095 0.77 -0.5 935,285 + +1.0 935,285 + +0.3 935,369 - -0.7 935,433 + -1.5 935,724 + BPHYT_RS04100 0.48 +0.9 936,008 + -0.3 936,027 + -1.4 936,028 - -1.2 936,028 - -0.8 936,060 + BPHYT_RS04105 0.15 +0.4 936,279 + BPHYT_RS04105 0.68 -0.6 936,543 + -0.7 936,548 - -0.0 936,637 + BPHYT_RS04110 0.12 -0.4 936,702 + BPHYT_RS04110 0.16 +0.9 936,705 + BPHYT_RS04110 0.16 -0.0 936,706 - BPHYT_RS04110 0.16 +0.7 936,706 - BPHYT_RS04110 0.16 -0.1 936,776 + BPHYT_RS04110 0.20 +1.7 936,778 + BPHYT_RS04110 0.20 +0.4 936,778 + BPHYT_RS04110 0.20 -0.1 936,809 - BPHYT_RS04110 0.22 -2.0
Or see this region's nucleotide sequence