Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04090 and BPHYT_RS04095 are separated by 560 nucleotides BPHYT_RS04095 and BPHYT_RS04100 are separated by 277 nucleotides BPHYT_RS04100 and BPHYT_RS04105 overlap by 4 nucleotides
BPHYT_RS04090: BPHYT_RS04090 - CBS domain containing membrane protein, at 932,698 to 933,813
_RS04090
BPHYT_RS04095: BPHYT_RS04095 - SAM-dependent methyltransferase PhcB, at 934,374 to 935,192
_RS04095
BPHYT_RS04100: BPHYT_RS04100 - AraC family transcriptional regulator, at 935,470 to 936,000
_RS04100
BPHYT_RS04105: BPHYT_RS04105 - glyoxalase, at 935,997 to 936,413
_RS04105
Position (kb) 934
935
936 Strain fitness (log2 ratio) -1
0
1
2 at 933.383 kb on - strand, within BPHYT_RS04090 at 933.874 kb on - strand at 933.916 kb on - strand at 934.267 kb on - strand at 934.409 kb on + strand at 934.983 kb on + strand, within BPHYT_RS04095 at 935.002 kb on - strand, within BPHYT_RS04095 at 935.285 kb on + strand at 935.285 kb on + strand at 935.369 kb on - strand at 935.433 kb on + strand at 935.724 kb on + strand, within BPHYT_RS04100 at 936.008 kb on + strand at 936.027 kb on + strand at 936.028 kb on - strand at 936.028 kb on - strand at 936.060 kb on + strand, within BPHYT_RS04105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 933,383 - BPHYT_RS04090 0.61 -0.7 933,874 - -0.1 933,916 - +0.2 934,267 - +1.9 934,409 + +0.9 934,983 + BPHYT_RS04095 0.74 +1.9 935,002 - BPHYT_RS04095 0.77 -0.5 935,285 + +1.0 935,285 + +0.3 935,369 - -0.7 935,433 + -1.5 935,724 + BPHYT_RS04100 0.48 +0.9 936,008 + -0.3 936,027 + -1.4 936,028 - -1.2 936,028 - -0.8 936,060 + BPHYT_RS04105 0.15 +0.4
Or see this region's nucleotide sequence