Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04080 and BPHYT_RS04085 are separated by 6 nucleotides BPHYT_RS04085 and BPHYT_RS04090 are separated by 89 nucleotides BPHYT_RS04090 and BPHYT_RS04095 are separated by 560 nucleotides
BPHYT_RS04080: BPHYT_RS04080 - chloride channel protein, at 930,398 to 932,188
_RS04080
BPHYT_RS04085: BPHYT_RS04085 - MarR family transcriptional regulator, at 932,195 to 932,608
_RS04085
BPHYT_RS04090: BPHYT_RS04090 - CBS domain containing membrane protein, at 932,698 to 933,813
_RS04090
BPHYT_RS04095: BPHYT_RS04095 - SAM-dependent methyltransferase PhcB, at 934,374 to 935,192
_RS04095
Position (kb) 932
933
934 Strain fitness (log2 ratio) -1
0
1
2 at 932.662 kb on + strand at 932.735 kb on + strand at 932.819 kb on + strand, within BPHYT_RS04090 at 932.820 kb on - strand, within BPHYT_RS04090 at 933.055 kb on - strand, within BPHYT_RS04090 at 933.366 kb on - strand, within BPHYT_RS04090 at 933.383 kb on - strand, within BPHYT_RS04090 at 933.874 kb on - strand at 933.916 kb on - strand at 934.267 kb on - strand at 934.409 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 932,662 + -0.1 932,735 + -0.1 932,819 + BPHYT_RS04090 0.11 -0.3 932,820 - BPHYT_RS04090 0.11 -0.7 933,055 - BPHYT_RS04090 0.32 -0.2 933,366 - BPHYT_RS04090 0.60 -0.0 933,383 - BPHYT_RS04090 0.61 -0.7 933,874 - -0.1 933,916 - +0.2 934,267 - +1.9 934,409 + +0.9
Or see this region's nucleotide sequence