Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04085

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04080 and BPHYT_RS04085 are separated by 6 nucleotidesBPHYT_RS04085 and BPHYT_RS04090 are separated by 89 nucleotides BPHYT_RS04080: BPHYT_RS04080 - chloride channel protein, at 930,398 to 932,188 _RS04080 BPHYT_RS04085: BPHYT_RS04085 - MarR family transcriptional regulator, at 932,195 to 932,608 _RS04085 BPHYT_RS04090: BPHYT_RS04090 - CBS domain containing membrane protein, at 932,698 to 933,813 _RS04090 Position (kb) 932 933Strain fitness (log2 ratio) -3 -2 -1 0 1at 931.235 kb on + strand, within BPHYT_RS04080at 932.662 kb on + strandat 932.735 kb on + strandat 932.819 kb on + strand, within BPHYT_RS04090at 932.820 kb on - strand, within BPHYT_RS04090at 933.055 kb on - strand, within BPHYT_RS04090at 933.366 kb on - strand, within BPHYT_RS04090at 933.383 kb on - strand, within BPHYT_RS04090

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
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931,235 + BPHYT_RS04080 0.47 -3.0
932,662 + -0.1
932,735 + -0.1
932,819 + BPHYT_RS04090 0.11 -0.3
932,820 - BPHYT_RS04090 0.11 -0.7
933,055 - BPHYT_RS04090 0.32 -0.2
933,366 - BPHYT_RS04090 0.60 -0.0
933,383 - BPHYT_RS04090 0.61 -0.7

Or see this region's nucleotide sequence