Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04050 and BPHYT_RS04055 are separated by 330 nucleotides BPHYT_RS04055 and BPHYT_RS04060 overlap by 1 nucleotides
BPHYT_RS04050: BPHYT_RS04050 - group 1 glycosyl transferase, at 923,700 to 924,905
_RS04050
BPHYT_RS04055: BPHYT_RS04055 - PST family polysaccharide export protein, at 925,236 to 926,489
_RS04055
BPHYT_RS04060: BPHYT_RS04060 - glycosyl transferase, at 926,489 to 927,562
_RS04060
Position (kb) 925
926
927 Strain fitness (log2 ratio) -1
0
1 at 924.550 kb on + strand, within BPHYT_RS04050 at 924.877 kb on + strand at 924.878 kb on - strand at 924.878 kb on - strand at 924.920 kb on + strand at 924.986 kb on + strand at 924.991 kb on - strand at 925.148 kb on + strand at 925.149 kb on - strand at 925.659 kb on + strand, within BPHYT_RS04055 at 925.660 kb on - strand, within BPHYT_RS04055 at 925.663 kb on - strand, within BPHYT_RS04055 at 925.755 kb on + strand, within BPHYT_RS04055 at 925.996 kb on - strand, within BPHYT_RS04055 at 926.127 kb on + strand, within BPHYT_RS04055 at 926.458 kb on + strand at 926.813 kb on + strand, within BPHYT_RS04060 at 927.116 kb on + strand, within BPHYT_RS04060 at 927.117 kb on - strand, within BPHYT_RS04060 at 927.144 kb on - strand, within BPHYT_RS04060
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 924,550 + BPHYT_RS04050 0.70 +0.6 924,877 + -0.1 924,878 - -0.4 924,878 - -0.2 924,920 + +0.9 924,986 + -0.3 924,991 - +1.5 925,148 + -0.9 925,149 - -0.2 925,659 + BPHYT_RS04055 0.34 +0.2 925,660 - BPHYT_RS04055 0.34 -0.4 925,663 - BPHYT_RS04055 0.34 -0.7 925,755 + BPHYT_RS04055 0.41 +0.7 925,996 - BPHYT_RS04055 0.61 +1.1 926,127 + BPHYT_RS04055 0.71 +0.6 926,458 + -0.8 926,813 + BPHYT_RS04060 0.30 -0.0 927,116 + BPHYT_RS04060 0.58 -0.3 927,117 - BPHYT_RS04060 0.58 -0.6 927,144 - BPHYT_RS04060 0.61 -1.2
Or see this region's nucleotide sequence