Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03550 and BPHYT_RS03555 are separated by 186 nucleotides BPHYT_RS03555 and BPHYT_RS03560 are separated by 289 nucleotides
BPHYT_RS03550: BPHYT_RS03550 - hypothetical protein, at 800,123 to 804,313
_RS03550
BPHYT_RS03555: BPHYT_RS03555 - glutamine-synthetase adenylyltransferase, at 804,500 to 807,292
_RS03555
BPHYT_RS03560: BPHYT_RS03560 - DNA repair protein, at 807,582 to 809,252
_RS03560
Position (kb) 804
805
806
807
808 Strain fitness (log2 ratio) -2
-1
0
1 at 803.547 kb on + strand, within BPHYT_RS03550 at 803.547 kb on + strand, within BPHYT_RS03550 at 803.547 kb on + strand, within BPHYT_RS03550 at 803.547 kb on + strand at 803.548 kb on - strand, within BPHYT_RS03550 at 803.548 kb on - strand, within BPHYT_RS03550 at 803.548 kb on - strand, within BPHYT_RS03550 at 803.708 kb on - strand, within BPHYT_RS03550 at 804.012 kb on - strand at 804.153 kb on + strand at 804.154 kb on - strand at 804.331 kb on + strand at 804.336 kb on + strand at 804.362 kb on + strand at 804.380 kb on - strand at 804.450 kb on + strand at 804.451 kb on - strand at 804.451 kb on - strand at 804.531 kb on - strand at 804.531 kb on - strand at 804.531 kb on - strand at 804.622 kb on + strand at 804.977 kb on + strand, within BPHYT_RS03555 at 804.978 kb on - strand, within BPHYT_RS03555 at 805.175 kb on + strand, within BPHYT_RS03555 at 805.175 kb on + strand, within BPHYT_RS03555 at 805.181 kb on + strand, within BPHYT_RS03555 at 805.182 kb on - strand, within BPHYT_RS03555 at 805.208 kb on + strand, within BPHYT_RS03555 at 805.208 kb on + strand, within BPHYT_RS03555 at 805.208 kb on + strand, within BPHYT_RS03555 at 805.625 kb on + strand, within BPHYT_RS03555 at 805.631 kb on - strand, within BPHYT_RS03555 at 805.709 kb on + strand, within BPHYT_RS03555 at 805.710 kb on - strand, within BPHYT_RS03555 at 805.789 kb on - strand, within BPHYT_RS03555 at 805.881 kb on + strand, within BPHYT_RS03555 at 806.117 kb on + strand, within BPHYT_RS03555 at 806.118 kb on - strand, within BPHYT_RS03555 at 806.118 kb on - strand, within BPHYT_RS03555 at 806.589 kb on - strand, within BPHYT_RS03555 at 806.589 kb on - strand, within BPHYT_RS03555 at 806.589 kb on - strand, within BPHYT_RS03555 at 806.589 kb on - strand, within BPHYT_RS03555 at 806.621 kb on + strand, within BPHYT_RS03555 at 806.630 kb on + strand, within BPHYT_RS03555 at 806.630 kb on + strand, within BPHYT_RS03555 at 806.630 kb on + strand, within BPHYT_RS03555 at 806.631 kb on - strand, within BPHYT_RS03555 at 806.788 kb on + strand, within BPHYT_RS03555 at 807.035 kb on + strand at 807.100 kb on - strand at 807.165 kb on - strand at 807.173 kb on + strand at 807.178 kb on + strand at 807.178 kb on + strand at 807.244 kb on + strand at 807.244 kb on + strand at 807.583 kb on + strand at 807.584 kb on - strand at 807.584 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 803,547 + BPHYT_RS03550 0.82 -0.7 803,547 + BPHYT_RS03550 0.82 -0.0 803,547 + BPHYT_RS03550 0.82 +0.3 803,547 + +0.3 803,548 - BPHYT_RS03550 0.82 +1.7 803,548 - BPHYT_RS03550 0.82 -0.2 803,548 - BPHYT_RS03550 0.82 +0.8 803,708 - BPHYT_RS03550 0.86 -0.7 804,012 - +1.3 804,153 + -0.7 804,154 - -0.9 804,331 + -1.1 804,336 + -0.3 804,362 + +1.4 804,380 - -0.1 804,450 + +0.3 804,451 - +0.7 804,451 - +0.6 804,531 - -0.2 804,531 - +0.3 804,531 - -0.8 804,622 + +0.4 804,977 + BPHYT_RS03555 0.17 -0.7 804,978 - BPHYT_RS03555 0.17 -0.7 805,175 + BPHYT_RS03555 0.24 -0.5 805,175 + BPHYT_RS03555 0.24 +0.3 805,181 + BPHYT_RS03555 0.24 -0.1 805,182 - BPHYT_RS03555 0.24 -0.0 805,208 + BPHYT_RS03555 0.25 +0.1 805,208 + BPHYT_RS03555 0.25 -1.7 805,208 + BPHYT_RS03555 0.25 +1.0 805,625 + BPHYT_RS03555 0.40 -0.9 805,631 - BPHYT_RS03555 0.40 +0.4 805,709 + BPHYT_RS03555 0.43 -2.3 805,710 - BPHYT_RS03555 0.43 -1.1 805,789 - BPHYT_RS03555 0.46 -0.1 805,881 + BPHYT_RS03555 0.49 +0.6 806,117 + BPHYT_RS03555 0.58 +1.0 806,118 - BPHYT_RS03555 0.58 -2.1 806,118 - BPHYT_RS03555 0.58 +0.2 806,589 - BPHYT_RS03555 0.75 -2.3 806,589 - BPHYT_RS03555 0.75 +0.5 806,589 - BPHYT_RS03555 0.75 -0.1 806,589 - BPHYT_RS03555 0.75 -0.2 806,621 + BPHYT_RS03555 0.76 -2.5 806,630 + BPHYT_RS03555 0.76 -0.0 806,630 + BPHYT_RS03555 0.76 -1.3 806,630 + BPHYT_RS03555 0.76 -1.4 806,631 - BPHYT_RS03555 0.76 +0.3 806,788 + BPHYT_RS03555 0.82 -1.1 807,035 + -0.4 807,100 - -0.1 807,165 - -0.6 807,173 + -1.3 807,178 + -0.0 807,178 + -0.6 807,244 + -0.8 807,244 + -0.7 807,583 + +1.1 807,584 - -0.1 807,584 - +0.7
Or see this region's nucleotide sequence