Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03180 and BPHYT_RS03185 are separated by 23 nucleotides BPHYT_RS03185 and BPHYT_RS03190 are separated by 182 nucleotides BPHYT_RS03190 and BPHYT_RS03195 are separated by 75 nucleotides BPHYT_RS03195 and BPHYT_RS03200 are separated by 63 nucleotides
BPHYT_RS03180: BPHYT_RS03180 - hypothetical protein, at 712,688 to 714,265
_RS03180
BPHYT_RS03185: BPHYT_RS03185 - thiopurine S-methyltransferase, at 714,289 to 714,912
_RS03185
BPHYT_RS03190: BPHYT_RS03190 - FmdB family transcriptional regulator, at 715,095 to 715,472
_RS03190
BPHYT_RS03195: BPHYT_RS03195 - membrane protein, at 715,548 to 716,201
_RS03195
BPHYT_RS03200: BPHYT_RS03200 - aspartate--tRNA(Asp/Asn) ligase, at 716,265 to 718,064
_RS03200
Position (kb) 715
716 Strain fitness (log2 ratio) -2
-1
0
1
2 at 714.478 kb on + strand, within BPHYT_RS03185 at 714.613 kb on + strand, within BPHYT_RS03185 at 714.613 kb on + strand, within BPHYT_RS03185 at 714.627 kb on + strand, within BPHYT_RS03185 at 714.644 kb on - strand, within BPHYT_RS03185 at 714.691 kb on + strand, within BPHYT_RS03185 at 714.692 kb on - strand, within BPHYT_RS03185 at 714.750 kb on + strand, within BPHYT_RS03185 at 714.820 kb on + strand, within BPHYT_RS03185 at 714.978 kb on + strand at 715.068 kb on + strand at 715.068 kb on + strand at 715.254 kb on + strand, within BPHYT_RS03190 at 715.470 kb on + strand at 715.470 kb on + strand at 715.470 kb on + strand at 715.470 kb on + strand at 715.543 kb on + strand at 715.751 kb on + strand, within BPHYT_RS03195 at 715.751 kb on + strand, within BPHYT_RS03195 at 715.751 kb on + strand, within BPHYT_RS03195 at 715.877 kb on + strand, within BPHYT_RS03195 at 715.947 kb on + strand, within BPHYT_RS03195 at 715.947 kb on + strand, within BPHYT_RS03195 at 715.949 kb on + strand, within BPHYT_RS03195 at 716.022 kb on + strand, within BPHYT_RS03195 at 716.022 kb on + strand, within BPHYT_RS03195 at 716.121 kb on + strand, within BPHYT_RS03195 at 716.121 kb on + strand, within BPHYT_RS03195 at 716.199 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 714,478 + BPHYT_RS03185 0.30 +1.1 714,613 + BPHYT_RS03185 0.52 -0.0 714,613 + BPHYT_RS03185 0.52 +0.9 714,627 + BPHYT_RS03185 0.54 +1.2 714,644 - BPHYT_RS03185 0.57 -0.4 714,691 + BPHYT_RS03185 0.64 -0.7 714,692 - BPHYT_RS03185 0.65 -1.7 714,750 + BPHYT_RS03185 0.74 -0.2 714,820 + BPHYT_RS03185 0.85 +1.3 714,978 + +0.8 715,068 + -0.1 715,068 + -2.1 715,254 + BPHYT_RS03190 0.42 +0.9 715,470 + -0.1 715,470 + +1.6 715,470 + +0.5 715,470 + +0.4 715,543 + +0.5 715,751 + BPHYT_RS03195 0.31 -1.1 715,751 + BPHYT_RS03195 0.31 +0.1 715,751 + BPHYT_RS03195 0.31 +0.8 715,877 + BPHYT_RS03195 0.50 -0.6 715,947 + BPHYT_RS03195 0.61 -0.7 715,947 + BPHYT_RS03195 0.61 +0.4 715,949 + BPHYT_RS03195 0.61 -0.8 716,022 + BPHYT_RS03195 0.72 -0.4 716,022 + BPHYT_RS03195 0.72 +1.8 716,121 + BPHYT_RS03195 0.88 -0.9 716,121 + BPHYT_RS03195 0.88 -0.2 716,199 + -0.7
Or see this region's nucleotide sequence