Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02950 and BPHYT_RS02955 are separated by 100 nucleotides BPHYT_RS02955 and BPHYT_RS02960 are separated by 77 nucleotides
BPHYT_RS02950: BPHYT_RS02950 - NUDIX hydrolase, at 655,253 to 656,116
_RS02950
BPHYT_RS02955: BPHYT_RS02955 - formyltetrahydrofolate deformylase, at 656,217 to 657,086
_RS02955
BPHYT_RS02960: BPHYT_RS02960 - peptidase, at 657,164 to 658,390
_RS02960
Position (kb) 656
657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 655.518 kb on - strand, within BPHYT_RS02950 at 655.556 kb on + strand, within BPHYT_RS02950 at 655.557 kb on - strand, within BPHYT_RS02950 at 655.557 kb on - strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.598 kb on + strand, within BPHYT_RS02950 at 655.624 kb on - strand, within BPHYT_RS02950 at 655.628 kb on + strand, within BPHYT_RS02950 at 655.628 kb on + strand, within BPHYT_RS02950 at 655.892 kb on + strand, within BPHYT_RS02950 at 656.316 kb on - strand, within BPHYT_RS02955 at 656.316 kb on - strand, within BPHYT_RS02955 at 656.450 kb on + strand, within BPHYT_RS02955 at 656.604 kb on + strand, within BPHYT_RS02955 at 656.604 kb on + strand, within BPHYT_RS02955 at 656.604 kb on + strand, within BPHYT_RS02955 at 656.605 kb on - strand, within BPHYT_RS02955 at 656.745 kb on + strand, within BPHYT_RS02955 at 656.844 kb on + strand, within BPHYT_RS02955 at 656.895 kb on + strand, within BPHYT_RS02955 at 656.895 kb on + strand, within BPHYT_RS02955 at 656.895 kb on + strand, within BPHYT_RS02955 at 656.895 kb on + strand, within BPHYT_RS02955 at 656.896 kb on - strand, within BPHYT_RS02955 at 657.098 kb on - strand at 657.098 kb on - strand at 657.371 kb on - strand, within BPHYT_RS02960 at 657.435 kb on + strand, within BPHYT_RS02960 at 657.435 kb on + strand, within BPHYT_RS02960 at 657.486 kb on + strand, within BPHYT_RS02960 at 657.525 kb on + strand, within BPHYT_RS02960 at 657.526 kb on - strand, within BPHYT_RS02960 at 657.799 kb on + strand, within BPHYT_RS02960 at 657.799 kb on + strand, within BPHYT_RS02960 at 657.799 kb on + strand, within BPHYT_RS02960 at 657.800 kb on - strand, within BPHYT_RS02960 at 657.800 kb on - strand, within BPHYT_RS02960 at 657.800 kb on - strand, within BPHYT_RS02960 at 657.800 kb on - strand, within BPHYT_RS02960 at 657.801 kb on + strand, within BPHYT_RS02960 at 657.978 kb on + strand, within BPHYT_RS02960
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 655,518 - BPHYT_RS02950 0.31 +0.6 655,556 + BPHYT_RS02950 0.35 -1.4 655,557 - BPHYT_RS02950 0.35 +2.1 655,557 - BPHYT_RS02950 0.35 +0.4 655,598 + BPHYT_RS02950 0.40 -1.5 655,598 + BPHYT_RS02950 0.40 -0.2 655,598 + BPHYT_RS02950 0.40 +0.7 655,624 - BPHYT_RS02950 0.43 +0.3 655,628 + BPHYT_RS02950 0.43 +0.9 655,628 + BPHYT_RS02950 0.43 +1.0 655,892 + BPHYT_RS02950 0.74 -0.8 656,316 - BPHYT_RS02955 0.11 -1.3 656,316 - BPHYT_RS02955 0.11 -0.8 656,450 + BPHYT_RS02955 0.27 -1.9 656,604 + BPHYT_RS02955 0.44 -1.5 656,604 + BPHYT_RS02955 0.44 -2.6 656,604 + BPHYT_RS02955 0.44 -1.1 656,605 - BPHYT_RS02955 0.45 -1.7 656,745 + BPHYT_RS02955 0.61 -0.7 656,844 + BPHYT_RS02955 0.72 -0.7 656,895 + BPHYT_RS02955 0.78 -1.7 656,895 + BPHYT_RS02955 0.78 -2.0 656,895 + BPHYT_RS02955 0.78 -2.9 656,895 + BPHYT_RS02955 0.78 -1.1 656,896 - BPHYT_RS02955 0.78 -1.4 657,098 - -1.1 657,098 - -0.7 657,371 - BPHYT_RS02960 0.17 +1.5 657,435 + BPHYT_RS02960 0.22 -1.0 657,435 + BPHYT_RS02960 0.22 -0.2 657,486 + BPHYT_RS02960 0.26 -0.4 657,525 + BPHYT_RS02960 0.29 +0.5 657,526 - BPHYT_RS02960 0.30 -0.2 657,799 + BPHYT_RS02960 0.52 -0.7 657,799 + BPHYT_RS02960 0.52 +1.2 657,799 + BPHYT_RS02960 0.52 +1.1 657,800 - BPHYT_RS02960 0.52 +0.3 657,800 - BPHYT_RS02960 0.52 +0.2 657,800 - BPHYT_RS02960 0.52 -0.5 657,800 - BPHYT_RS02960 0.52 -1.3 657,801 + BPHYT_RS02960 0.52 +1.0 657,978 + BPHYT_RS02960 0.66 +0.9
Or see this region's nucleotide sequence