Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02875

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS02865 and BPHYT_RS02870 are separated by 87 nucleotidesBPHYT_RS02870 and BPHYT_RS02875 are separated by 73 nucleotidesBPHYT_RS02875 and BPHYT_RS02880 are separated by 29 nucleotidesBPHYT_RS02880 and BPHYT_RS02885 are separated by 39 nucleotides BPHYT_RS02865: BPHYT_RS02865 - hypothetical protein, at 638,386 to 640,227 _RS02865 BPHYT_RS02870: BPHYT_RS02870 - formamidopyrimidine-DNA glycosylase, at 640,315 to 641,145 _RS02870 BPHYT_RS02875: BPHYT_RS02875 - adenine glycosylase, at 641,219 to 642,280 _RS02875 BPHYT_RS02880: BPHYT_RS02880 - ATP-dependent protease, at 642,310 to 642,945 _RS02880 BPHYT_RS02885: BPHYT_RS02885 - glmZ(sRNA)-inactivating NTPase, at 642,985 to 643,878 _RS02885 Position (kb) 641 642 643Strain fitness (log2 ratio) -2 -1 0 1 2at 640.257 kb on + strandat 640.257 kb on + strandat 640.270 kb on - strandat 640.275 kb on - strandat 640.275 kb on - strandat 640.310 kb on + strandat 640.311 kb on - strandat 640.363 kb on + strandat 640.364 kb on - strandat 640.364 kb on - strandat 640.364 kb on - strandat 640.364 kb on - strandat 640.402 kb on - strand, within BPHYT_RS02870at 640.489 kb on + strand, within BPHYT_RS02870at 640.489 kb on + strand, within BPHYT_RS02870at 640.490 kb on - strandat 640.760 kb on + strand, within BPHYT_RS02870at 640.761 kb on - strand, within BPHYT_RS02870at 640.842 kb on + strand, within BPHYT_RS02870at 640.843 kb on - strand, within BPHYT_RS02870at 640.843 kb on - strand, within BPHYT_RS02870at 640.843 kb on - strand, within BPHYT_RS02870at 640.843 kb on - strand, within BPHYT_RS02870at 640.843 kb on - strand, within BPHYT_RS02870at 640.846 kb on + strand, within BPHYT_RS02870at 640.846 kb on + strand, within BPHYT_RS02870at 640.847 kb on - strand, within BPHYT_RS02870at 640.847 kb on - strand, within BPHYT_RS02870at 640.847 kb on - strand, within BPHYT_RS02870at 641.020 kb on + strand, within BPHYT_RS02870at 641.035 kb on + strand, within BPHYT_RS02870at 641.036 kb on - strand, within BPHYT_RS02870at 641.036 kb on - strand, within BPHYT_RS02870at 641.119 kb on + strandat 641.119 kb on + strandat 641.120 kb on - strandat 641.144 kb on - strandat 641.144 kb on - strandat 641.166 kb on + strandat 641.166 kb on + strandat 641.167 kb on - strandat 641.367 kb on - strand, within BPHYT_RS02875at 641.456 kb on + strand, within BPHYT_RS02875at 641.457 kb on - strand, within BPHYT_RS02875at 641.457 kb on - strand, within BPHYT_RS02875at 641.460 kb on - strand, within BPHYT_RS02875at 641.460 kb on - strand, within BPHYT_RS02875at 642.335 kb on + strandat 642.336 kb on - strandat 642.766 kb on + strand, within BPHYT_RS02880at 642.767 kb on - strand, within BPHYT_RS02880at 642.894 kb on + strandat 642.894 kb on + strandat 642.895 kb on - strandat 642.930 kb on + strandat 642.930 kb on + strandat 642.937 kb on - strandat 642.937 kb on - strandat 642.994 kb on + strandat 642.994 kb on + strandat 642.995 kb on - strandat 643.135 kb on + strand, within BPHYT_RS02885at 643.136 kb on - strand, within BPHYT_RS02885at 643.139 kb on + strand, within BPHYT_RS02885at 643.139 kb on + strand, within BPHYT_RS02885at 643.140 kb on - strand, within BPHYT_RS02885at 643.140 kb on - strand, within BPHYT_RS02885at 643.140 kb on - strand, within BPHYT_RS02885at 643.140 kb on - strand, within BPHYT_RS02885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
remove
640,257 + +1.1
640,257 + -0.3
640,270 - +0.2
640,275 - -0.3
640,275 - +0.0
640,310 + +0.2
640,311 - -0.7
640,363 + +0.1
640,364 - +1.0
640,364 - +1.0
640,364 - -0.6
640,364 - -1.2
640,402 - BPHYT_RS02870 0.10 +0.5
640,489 + BPHYT_RS02870 0.21 +0.1
640,489 + BPHYT_RS02870 0.21 +0.7
640,490 - -0.1
640,760 + BPHYT_RS02870 0.54 -0.3
640,761 - BPHYT_RS02870 0.54 +0.6
640,842 + BPHYT_RS02870 0.63 -0.3
640,843 - BPHYT_RS02870 0.64 +0.6
640,843 - BPHYT_RS02870 0.64 +0.3
640,843 - BPHYT_RS02870 0.64 +2.1
640,843 - BPHYT_RS02870 0.64 +1.2
640,843 - BPHYT_RS02870 0.64 +0.3
640,846 + BPHYT_RS02870 0.64 -0.7
640,846 + BPHYT_RS02870 0.64 +1.9
640,847 - BPHYT_RS02870 0.64 +0.4
640,847 - BPHYT_RS02870 0.64 +1.7
640,847 - BPHYT_RS02870 0.64 +1.7
641,020 + BPHYT_RS02870 0.85 -1.0
641,035 + BPHYT_RS02870 0.87 -0.8
641,036 - BPHYT_RS02870 0.87 +0.9
641,036 - BPHYT_RS02870 0.87 +0.5
641,119 + -1.1
641,119 + +0.6
641,120 - -0.2
641,144 - +0.3
641,144 - +0.1
641,166 + +0.4
641,166 + -0.2
641,167 - -1.4
641,367 - BPHYT_RS02875 0.14 -0.1
641,456 + BPHYT_RS02875 0.22 -1.4
641,457 - BPHYT_RS02875 0.22 +0.6
641,457 - BPHYT_RS02875 0.22 -0.2
641,460 - BPHYT_RS02875 0.23 -0.9
641,460 - BPHYT_RS02875 0.23 -0.4
642,335 + -0.6
642,336 - +0.8
642,766 + BPHYT_RS02880 0.72 -0.5
642,767 - BPHYT_RS02880 0.72 +0.7
642,894 + +0.2
642,894 + +0.0
642,895 - +0.0
642,930 + +0.5
642,930 + -0.2
642,937 - -1.4
642,937 - +0.5
642,994 + -1.1
642,994 + +0.4
642,995 - +1.9
643,135 + BPHYT_RS02885 0.17 -0.5
643,136 - BPHYT_RS02885 0.17 -2.1
643,139 + BPHYT_RS02885 0.17 -1.3
643,139 + BPHYT_RS02885 0.17 -0.6
643,140 - BPHYT_RS02885 0.17 -1.7
643,140 - BPHYT_RS02885 0.17 -0.8
643,140 - BPHYT_RS02885 0.17 -2.0
643,140 - BPHYT_RS02885 0.17 -0.7

Or see this region's nucleotide sequence