Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02495 and BPHYT_RS02500 overlap by 4 nucleotides BPHYT_RS02500 and BPHYT_RS02505 are separated by 85 nucleotides BPHYT_RS02505 and BPHYT_RS02510 are separated by 404 nucleotides
BPHYT_RS02495: BPHYT_RS02495 - ABC transporter, at 565,830 to 566,768
_RS02495
BPHYT_RS02500: BPHYT_RS02500 - spermidine/putrescine ABC transporter permease, at 566,765 to 567,556
_RS02500
BPHYT_RS02505: BPHYT_RS02505 - spermidine/putrescine ABC transporter ATPase, at 567,642 to 568,712
_RS02505
BPHYT_RS02510: BPHYT_RS02510 - C4-dicarboxylate ABC transporter, at 569,117 to 570,397
_RS02510
Position (kb) 567
568
569 Strain fitness (log2 ratio) -1
0
1
2
3 at 566.880 kb on - strand, within BPHYT_RS02500 at 566.880 kb on - strand, within BPHYT_RS02500 at 567.110 kb on + strand, within BPHYT_RS02500 at 567.110 kb on + strand, within BPHYT_RS02500 at 567.110 kb on + strand, within BPHYT_RS02500 at 567.111 kb on - strand, within BPHYT_RS02500 at 567.111 kb on - strand, within BPHYT_RS02500 at 567.113 kb on - strand, within BPHYT_RS02500 at 567.171 kb on + strand, within BPHYT_RS02500 at 567.179 kb on + strand, within BPHYT_RS02500 at 567.200 kb on + strand, within BPHYT_RS02500 at 567.201 kb on - strand, within BPHYT_RS02500 at 567.517 kb on - strand at 567.671 kb on + strand at 567.672 kb on - strand at 567.672 kb on - strand at 567.672 kb on - strand at 567.672 kb on - strand at 567.672 kb on - strand at 567.737 kb on + strand at 567.891 kb on + strand, within BPHYT_RS02505 at 568.148 kb on + strand, within BPHYT_RS02505 at 568.149 kb on - strand, within BPHYT_RS02505 at 568.306 kb on - strand, within BPHYT_RS02505 at 568.612 kb on + strand at 568.710 kb on + strand at 568.936 kb on + strand at 568.936 kb on + strand at 568.961 kb on + strand at 568.962 kb on - strand at 568.962 kb on - strand at 568.962 kb on - strand at 568.962 kb on - strand at 569.030 kb on - strand at 569.055 kb on - strand at 569.128 kb on + strand at 569.134 kb on + strand at 569.144 kb on + strand at 569.145 kb on - strand at 569.196 kb on - strand at 569.354 kb on + strand, within BPHYT_RS02510 at 569.354 kb on + strand, within BPHYT_RS02510 at 569.354 kb on + strand, within BPHYT_RS02510 at 569.354 kb on + strand, within BPHYT_RS02510 at 569.474 kb on + strand, within BPHYT_RS02510 at 569.474 kb on + strand, within BPHYT_RS02510
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 566,880 - BPHYT_RS02500 0.15 -0.3 566,880 - BPHYT_RS02500 0.15 -0.1 567,110 + BPHYT_RS02500 0.44 +2.2 567,110 + BPHYT_RS02500 0.44 -0.9 567,110 + BPHYT_RS02500 0.44 +1.2 567,111 - BPHYT_RS02500 0.44 -0.4 567,111 - BPHYT_RS02500 0.44 +0.6 567,113 - BPHYT_RS02500 0.44 +0.1 567,171 + BPHYT_RS02500 0.51 -1.5 567,179 + BPHYT_RS02500 0.52 -0.6 567,200 + BPHYT_RS02500 0.55 +0.1 567,201 - BPHYT_RS02500 0.55 -0.3 567,517 - +0.9 567,671 + -0.3 567,672 - +0.8 567,672 - -0.4 567,672 - -0.9 567,672 - +1.2 567,672 - -0.1 567,737 + +0.1 567,891 + BPHYT_RS02505 0.23 +0.1 568,148 + BPHYT_RS02505 0.47 +0.4 568,149 - BPHYT_RS02505 0.47 +1.1 568,306 - BPHYT_RS02505 0.62 -0.8 568,612 + +1.1 568,710 + +1.4 568,936 + -0.2 568,936 + +2.8 568,961 + +0.1 568,962 - +0.0 568,962 - -0.2 568,962 - -0.4 568,962 - +0.6 569,030 - +0.2 569,055 - -0.5 569,128 + -0.5 569,134 + -0.5 569,144 + -0.0 569,145 - +1.1 569,196 - -0.2 569,354 + BPHYT_RS02510 0.19 +0.6 569,354 + BPHYT_RS02510 0.19 -0.0 569,354 + BPHYT_RS02510 0.19 +1.9 569,354 + BPHYT_RS02510 0.19 +1.2 569,474 + BPHYT_RS02510 0.28 -0.4 569,474 + BPHYT_RS02510 0.28 +0.3
Or see this region's nucleotide sequence