Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01550

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS01545 and BPHYT_RS01550 are separated by 380 nucleotidesBPHYT_RS01550 and BPHYT_RS01555 are separated by 193 nucleotides BPHYT_RS01545: BPHYT_RS01545 - rod shape-determining protein MreB, at 351,526 to 352,569 _RS01545 BPHYT_RS01550: BPHYT_RS01550 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 352,950 to 353,249 _RS01550 BPHYT_RS01555: BPHYT_RS01555 - glutamyl-tRNA(Gln) amidotransferase subunit A, at 353,443 to 354,930 _RS01555 Position (kb) 352 353 354Strain fitness (log2 ratio) -2 -1 0 1at 353.247 kb on + strandat 353.315 kb on + strandat 353.340 kb on + strandat 353.340 kb on + strandat 353.340 kb on + strandat 353.340 kb on + strandat 353.342 kb on + strandat 353.412 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
remove
353,247 + -0.8
353,315 + +0.4
353,340 + +1.3
353,340 + -0.7
353,340 + +0.7
353,340 + -0.1
353,342 + -2.7
353,412 + +0.7

Or see this region's nucleotide sequence