Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01505 and BPHYT_RS01510 are separated by 6 nucleotides BPHYT_RS01510 and BPHYT_RS01515 are separated by 213 nucleotides BPHYT_RS01515 and BPHYT_RS01520 overlap by 4 nucleotides BPHYT_RS01520 and BPHYT_RS01525 are separated by 107 nucleotides
BPHYT_RS01505: BPHYT_RS01505 - 7-cyano-7-deazaguanine reductase, at 343,247 to 343,879
_RS01505
BPHYT_RS01510: BPHYT_RS01510 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 343,886 to 344,332
_RS01510
BPHYT_RS01515: BPHYT_RS01515 - 2-dehydro-3-deoxyglucarate aldolase, at 344,546 to 345,328
_RS01515
BPHYT_RS01520: BPHYT_RS01520 - hypothetical protein, at 345,325 to 346,029
_RS01520
BPHYT_RS01525: BPHYT_RS01525 - cell wall shape-determining protein, at 346,137 to 347,285
_RS01525
Position (kb) 344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.731 kb on - strand, within BPHYT_RS01505 at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.863 kb on - strand at 343.957 kb on + strand, within BPHYT_RS01510 at 343.958 kb on - strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 344.117 kb on + strand, within BPHYT_RS01510 at 344.117 kb on + strand, within BPHYT_RS01510 at 344.118 kb on - strand, within BPHYT_RS01510 at 344.118 kb on - strand, within BPHYT_RS01510 at 344.128 kb on + strand, within BPHYT_RS01510 at 344.129 kb on - strand, within BPHYT_RS01510 at 344.129 kb on - strand, within BPHYT_RS01510 at 344.330 kb on + strand at 344.330 kb on + strand at 344.331 kb on - strand at 344.339 kb on + strand at 344.371 kb on + strand at 344.382 kb on + strand at 344.767 kb on - strand, within BPHYT_RS01515 at 344.767 kb on - strand, within BPHYT_RS01515 at 344.767 kb on - strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515 at 344.808 kb on + strand, within BPHYT_RS01515 at 344.969 kb on + strand, within BPHYT_RS01515 at 344.970 kb on - strand, within BPHYT_RS01515 at 345.200 kb on - strand, within BPHYT_RS01515 at 345.318 kb on + strand at 345.318 kb on + strand at 345.319 kb on - strand at 345.366 kb on + strand at 345.397 kb on + strand, within BPHYT_RS01520 at 345.398 kb on - strand, within BPHYT_RS01520 at 345.460 kb on + strand, within BPHYT_RS01520 at 345.541 kb on + strand, within BPHYT_RS01520 at 345.541 kb on + strand, within BPHYT_RS01520 at 345.542 kb on - strand, within BPHYT_RS01520 at 345.542 kb on - strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.627 kb on + strand, within BPHYT_RS01520 at 345.628 kb on - strand, within BPHYT_RS01520 at 345.628 kb on - strand, within BPHYT_RS01520 at 345.628 kb on - strand at 345.662 kb on - strand, within BPHYT_RS01520 at 345.813 kb on + strand, within BPHYT_RS01520 at 345.860 kb on - strand, within BPHYT_RS01520 at 345.877 kb on + strand, within BPHYT_RS01520 at 345.877 kb on + strand, within BPHYT_RS01520 at 345.877 kb on + strand at 345.878 kb on - strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.928 kb on + strand, within BPHYT_RS01520 at 345.932 kb on - strand, within BPHYT_RS01520 at 345.976 kb on + strand at 345.976 kb on + strand at 345.977 kb on - strand at 345.977 kb on - strand at 346.099 kb on + strand at 346.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days remove 343,731 - BPHYT_RS01505 0.76 -2.5 343,862 + -2.3 343,862 + +0.3 343,862 + -1.8 343,862 + -0.7 343,862 + -0.7 343,863 - -1.3 343,957 + BPHYT_RS01510 0.16 -0.7 343,958 - BPHYT_RS01510 0.16 +0.9 343,976 + BPHYT_RS01510 0.20 +0.3 343,976 + BPHYT_RS01510 0.20 -0.6 343,976 + BPHYT_RS01510 0.20 -1.8 343,976 + BPHYT_RS01510 0.20 -1.0 343,977 - BPHYT_RS01510 0.20 -0.5 343,977 - BPHYT_RS01510 0.20 -0.1 343,977 - BPHYT_RS01510 0.20 -1.1 343,977 - BPHYT_RS01510 0.20 -1.4 343,977 - BPHYT_RS01510 0.20 -0.8 344,117 + BPHYT_RS01510 0.52 +1.4 344,117 + BPHYT_RS01510 0.52 -0.8 344,118 - BPHYT_RS01510 0.52 -0.8 344,118 - BPHYT_RS01510 0.52 -0.7 344,128 + BPHYT_RS01510 0.54 -0.5 344,129 - BPHYT_RS01510 0.54 -0.7 344,129 - BPHYT_RS01510 0.54 -1.1 344,330 + +0.5 344,330 + +0.1 344,331 - -1.0 344,339 + -0.6 344,371 + -0.0 344,382 + +1.0 344,767 - BPHYT_RS01515 0.28 +0.4 344,767 - BPHYT_RS01515 0.28 -1.0 344,767 - BPHYT_RS01515 0.28 +1.6 344,808 + BPHYT_RS01515 0.33 -0.6 344,808 + BPHYT_RS01515 0.33 +1.0 344,808 + BPHYT_RS01515 0.33 +0.3 344,969 + BPHYT_RS01515 0.54 +0.4 344,970 - BPHYT_RS01515 0.54 +0.3 345,200 - BPHYT_RS01515 0.84 -0.0 345,318 + +0.7 345,318 + +0.9 345,319 - -0.5 345,366 + -1.1 345,397 + BPHYT_RS01520 0.10 +1.5 345,398 - BPHYT_RS01520 0.10 -0.2 345,460 + BPHYT_RS01520 0.19 +1.3 345,541 + BPHYT_RS01520 0.31 -0.3 345,541 + BPHYT_RS01520 0.31 +0.5 345,542 - BPHYT_RS01520 0.31 +2.1 345,542 - BPHYT_RS01520 0.31 -0.8 345,627 + BPHYT_RS01520 0.43 +0.4 345,627 + BPHYT_RS01520 0.43 +0.0 345,627 + BPHYT_RS01520 0.43 +0.5 345,627 + BPHYT_RS01520 0.43 +0.0 345,628 - BPHYT_RS01520 0.43 +1.5 345,628 - BPHYT_RS01520 0.43 +1.3 345,628 - -0.7 345,662 - BPHYT_RS01520 0.48 +0.6 345,813 + BPHYT_RS01520 0.69 -0.8 345,860 - BPHYT_RS01520 0.76 +0.6 345,877 + BPHYT_RS01520 0.78 -0.1 345,877 + BPHYT_RS01520 0.78 +0.0 345,877 + +0.3 345,878 - BPHYT_RS01520 0.78 +1.7 345,928 + BPHYT_RS01520 0.86 -0.1 345,928 + BPHYT_RS01520 0.86 -0.2 345,928 + BPHYT_RS01520 0.86 +0.6 345,932 - BPHYT_RS01520 0.86 +2.7 345,976 + +0.5 345,976 + +0.8 345,977 - +0.3 345,977 - +0.5 346,099 + -1.0 346,139 - -0.5
Or see this region's nucleotide sequence