Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4224

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
5,559,990	+				-0.1
5,560,025	+				-2.4
5,560,025	+				-1.6
5,560,026	-				-0.6
5,560,030	-				-1.1
5,560,054	-				-0.1
5,560,068	-				-1.8
5,560,071	+				-3.2
5,560,072	-				-2.1
5,560,089	-				-1.6
5,560,089	-				-1.1
5,560,093	-				-3.0
5,560,135	+				-2.2
5,560,136	-				+1.5
5,560,182	+				-2.4
5,560,184	+				+1.5
5,560,363	+				-0.1
5,560,600	+		BT4223	0.51	-1.6
5,560,609	+		BT4223	0.53	-2.1
5,560,621	-		BT4223	0.56	-2.1
5,560,639	-		BT4223	0.60	-0.6
5,560,656	+		BT4223	0.64	-1.1
5,560,723	+		BT4223	0.78	-2.8
5,560,745	+		BT4223	0.83	+1.9
5,560,831	-				-1.6
5,560,836	+				-1.1
5,560,836	+				-1.1
5,560,863	+				-1.6
5,561,000	+				+0.9
5,561,010	-				-2.4
5,561,120	+				+0.4
5,561,127	-				-1.6
5,561,195	+				-1.1
5,561,200	-				-1.3
5,561,338	+		BT4224	0.14	-1.6
5,561,346	-		BT4224	0.14	-2.6
5,561,346	-		BT4224	0.14	-0.1
5,561,350	+		BT4224	0.14	-1.1
5,561,392	-		BT4224	0.16	-1.8
5,561,403	-		BT4224	0.16	-1.1
5,561,448	-		BT4224	0.18	-0.1
5,561,460	-		BT4224	0.18	-2.9
5,561,462	-		BT4224	0.18	-1.1
5,561,463	+		BT4224	0.18	-1.1
5,561,486	+		BT4224	0.19	-2.7
5,561,489	+		BT4224	0.19	-0.6
5,561,494	+		BT4224	0.19	-0.1
5,561,494	+		BT4224	0.19	-2.4
5,561,512	-		BT4224	0.20	-2.1
5,561,516	+		BT4224	0.20	-2.9
5,561,521	-		BT4224	0.20	-2.4
5,561,521	-		BT4224	0.20	+1.1
5,561,556	+		BT4224	0.21	-3.2
5,561,556	+		BT4224	0.21	-0.9
5,561,556	+		BT4224	0.21	-0.8
5,561,557	-		BT4224	0.22	-1.1
5,561,557	-		BT4224	0.22	-2.1
5,561,557	-		BT4224	0.22	-2.6
5,561,610	-		BT4224	0.23	-1.8
5,561,610	-		BT4224	0.23	-2.6
5,561,622	-		BT4224	0.24	-3.1
5,561,622	-		BT4224	0.24	-2.4
5,561,623	+		BT4224	0.24	-2.1
5,561,634	-		BT4224	0.24	-2.4
5,561,639	-		BT4224	0.24	-2.1
5,561,660	+		BT4224	0.25	-2.9
5,561,661	-		BT4224	0.25	-0.1
5,561,662	+		BT4224	0.25	-2.2
5,561,662	+		BT4224	0.25	-2.6
5,561,666	+		BT4224	0.25	-0.1
5,561,667	-		BT4224	0.25	-1.1
5,561,669	-		BT4224	0.25	+0.4
5,561,728	-		BT4224	0.27	-2.9
5,561,728	-		BT4224	0.27	-1.6
5,561,856	+		BT4224	0.32	-2.6
5,561,857	-		BT4224	0.32	+1.3
5,561,867	+		BT4224	0.32	-1.8
5,561,873	+		BT4224	0.32	-1.1
5,561,883	+		BT4224	0.33	+1.9
5,561,907	+				-1.6
5,561,925	+		BT4224	0.34	-3.1
5,561,933	-		BT4224	0.35	-1.1
5,561,944	+		BT4224	0.35	-0.8
5,561,990	+		BT4224	0.37	-2.3
5,561,991	-		BT4224	0.37	-2.9
5,562,010	-		BT4224	0.37	-3.8
5,562,011	+		BT4224	0.37	-2.9
5,562,020	+		BT4224	0.38	-0.6
5,562,020	+		BT4224	0.38	-2.1
5,562,025	-		BT4224	0.38	-2.1
5,562,045	-		BT4224	0.38	-0.1
5,562,045	-		BT4224	0.38	-1.6
5,562,144	-		BT4224	0.42	-1.1
5,562,151	-		BT4224	0.42	-1.5
5,562,151	-		BT4224	0.42	-2.4
5,562,154	-		BT4224	0.42	+0.5
5,562,209	+		BT4224	0.44	-3.2
5,562,274	+		BT4224	0.46	+0.2
5,562,274	+		BT4224	0.46	-1.1
5,562,275	-		BT4224	0.46	-0.1
5,562,275	-		BT4224	0.46	-2.2
5,562,277	+				-0.1
5,562,281	+		BT4224	0.47	-3.1
5,562,281	+		BT4224	0.47	-1.1
5,562,330	+		BT4224	0.48	-1.6
5,562,393	-		BT4224	0.51	-3.9
5,562,432	+		BT4224	0.52	-2.1
5,562,452	+		BT4224	0.53	-1.1
5,562,477	+		BT4224	0.53	-2.4
5,562,554	+		BT4224	0.56	-1.2
5,562,556	+		BT4224	0.56	-0.3
5,562,564	-		BT4224	0.57	-1.5
5,562,602	+		BT4224	0.58	-2.4
5,562,649	-		BT4224	0.59	-3.0
5,562,669	-		BT4224	0.60	-1.6
5,562,671	-		BT4224	0.60	-1.1
5,562,683	+		BT4224	0.61	-1.2
5,562,716	+		BT4224	0.62	-1.1
5,562,724	+		BT4224	0.62	-3.5
5,562,915	-		BT4224	0.69	-1.4
5,562,948	+		BT4224	0.70	-0.1
5,562,970	+		BT4224	0.71	-2.9
5,563,013	+		BT4224	0.72	-2.4
5,563,067	+		BT4224	0.74	-2.9
5,563,067	+		BT4224	0.74	-1.4
5,563,068	-		BT4224	0.74	-2.2
5,563,090	+		BT4224	0.75	-2.6
5,563,091	-		BT4224	0.75	-2.6
5,563,154	+				-1.6
5,563,166	+		BT4224	0.77	-2.1
5,563,169	+		BT4224	0.78	-2.5
5,563,170	-		BT4224	0.78	-2.4
5,563,233	-		BT4224	0.80	-1.1
5,563,268	+		BT4224	0.81	-0.6
5,563,268	+		BT4224	0.81	-2.9
5,563,270	+		BT4224	0.81	-3.3
5,563,270	+		BT4224	0.81	-0.1
5,563,270	+		BT4224	0.81	-1.6
5,563,364	+		BT4224	0.84	-2.2
5,563,365	-		BT4224	0.84	-0.6
5,563,413	+		BT4224	0.86	-2.1
5,563,433	+		BT4224	0.87	-0.1
5,563,449	-		BT4224	0.87	-0.7
5,563,464	+		BT4224	0.88	-0.1
5,563,465	-		BT4224	0.88	-4.1
5,563,508	+		BT4224	0.89	-1.1
5,563,533	-				+0.2
5,563,534	+				-1.1
5,563,534	+				-1.7
5,563,534	+				-1.1
5,563,534	+				-3.9
5,563,537	+				-2.7
5,563,591	+				-3.9
5,563,660	-				-1.1
5,563,684	-				-4.3
5,563,733	+				-3.2
5,563,850	+				-1.2
5,563,885	+				-2.1
5,563,920	+				-1.4
5,563,929	-				-3.5
5,563,938	+		BT4225	0.10	-2.1
5,563,943	-		BT4225	0.11	-0.1
5,563,949	-		BT4225	0.11	-3.2
5,563,994	+		BT4225	0.15	-1.1
5,563,994	+		BT4225	0.15	-2.1
5,564,061	+		BT4225	0.22	-1.1
5,564,062	-		BT4225	0.22	-0.1
5,564,075	+		BT4225	0.23	-3.8
5,564,088	-		BT4225	0.24	-0.9
5,564,089	+		BT4225	0.25	-1.7
5,564,096	+		BT4225	0.25	+0.3
5,564,242	-		BT4225	0.39	+0.4
5,564,273	+		BT4225	0.42	-3.5
5,564,289	+		BT4225	0.44	-2.9
5,564,321	+		BT4225	0.47	-0.1
5,564,321	+		BT4225	0.47	-0.1
5,564,334	-		BT4225	0.48	-2.9
5,564,336	+		BT4225	0.48	-1.7
5,564,338	+		BT4225	0.48	-3.1
5,564,363	+		BT4225	0.51	-2.7
5,564,363	+		BT4225	0.51	-1.9
5,564,363	+		BT4225	0.51	-1.4
5,564,388	-		BT4225	0.53	-0.1
5,564,447	+		BT4225	0.59	-1.7
5,564,535	-		BT4225	0.67	+0.6
5,564,535	-		BT4225	0.67	-1.1
5,564,536	+		BT4225	0.67	-1.7
5,564,608	-		BT4225	0.74	-0.1
5,564,657	+		BT4225	0.79	-2.9
5,564,698	-		BT4225	0.83	-1.1
5,564,698	-		BT4225	0.83	-2.2
5,564,754	+		BT4225	0.88	-1.7
5,564,754	+		BT4225	0.88	+0.9
5,564,755	-		BT4225	0.88	-3.1