Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3833

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT_r15 and BT3832 are separated by 298 nucleotidesBT3832 and BT3833 are separated by 12 nucleotidesBT3833 and BT3834 are separated by 86 nucleotides BT_r15: BT_r15 - 5S ribosomal RNA (RefSeq), at 4,988,506 to 4,988,539 _r15 BT3832: BT3832 - conserved hypothetical protein (NCBI ptt file), at 4,988,838 to 4,989,377 BT3832 BT3833: BT3833 - 50S ribosomal protein L32 (Ribosomal protein I) (NCBI ptt file), at 4,989,390 to 4,989,575 BT3833 BT3834: BT3834 - 3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file), at 4,989,662 to 4,990,669 BT3834 Position (kb) 4989 4990Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4988.678 kb on + strandat 4988.678 kb on + strandat 4988.688 kb on - strandat 4988.713 kb on + strandat 4988.731 kb on + strandat 4988.731 kb on + strandat 4988.769 kb on + strandat 4988.855 kb on + strandat 4988.990 kb on + strand, within BT3832at 4988.992 kb on + strand, within BT3832at 4989.034 kb on + strand, within BT3832at 4989.034 kb on + strand, within BT3832at 4989.190 kb on + strand, within BT3832at 4989.203 kb on + strand, within BT3832at 4989.221 kb on + strand, within BT3832at 4989.221 kb on + strand, within BT3832at 4989.299 kb on + strand, within BT3832at 4989.635 kb on + strandat 4989.638 kb on + strandat 4989.638 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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4,988,678 + -1.4
4,988,678 + +0.6
4,988,688 - -1.9
4,988,713 + -3.6
4,988,731 + -0.4
4,988,731 + -1.5
4,988,769 + -3.1
4,988,855 + +1.1
4,988,990 + BT3832 0.28 +3.5
4,988,992 + BT3832 0.29 -2.3
4,989,034 + BT3832 0.36 -1.3
4,989,034 + BT3832 0.36 +1.4
4,989,190 + BT3832 0.65 +0.1
4,989,203 + BT3832 0.68 -2.6
4,989,221 + BT3832 0.71 -1.9
4,989,221 + BT3832 0.71 +2.4
4,989,299 + BT3832 0.85 +1.1
4,989,635 + -0.5
4,989,638 + -0.9
4,989,638 + -2.3

Or see this region's nucleotide sequence