Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4137

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
5,428,339	+		BT4136	0.73	-1.0
5,428,339	+		BT4136	0.73	-1.0
5,428,339	+		BT4136	0.73	-1.1
5,428,340	-		BT4136	0.73	-1.0
5,428,445	+		BT4136	0.79	+1.4
5,428,445	+		BT4136	0.79	-2.0
5,428,659	+				+0.0
5,428,660	-				+0.0
5,428,797	+				-2.0
5,428,800	+				-0.5
5,428,800	+				-2.0
5,428,803	-				+2.0
5,428,898	+				+0.9
5,428,938	-				-1.0
5,428,996	-				+1.6
5,429,013	-				-1.0
5,429,017	-				-2.8
5,429,017	-				+0.8
5,429,021	+				-2.0
5,429,021	+				-1.0
5,429,027	-				-2.0
5,429,151	-				-1.0
5,429,172	+				-1.6
5,429,172	+				-3.8
5,429,219	+				-0.6
5,429,220	-				+0.0
5,429,220	-				-1.8
5,429,220	-				-0.3
5,429,287	+				-2.0
5,429,322	-				-1.0
5,429,341	+				-1.2
5,429,357	+				-0.7
5,429,362	+				+2.2
5,429,362	+				-1.6
5,429,400	+				-1.3
5,429,403	+				-2.3
5,429,435	-				+0.0
5,429,446	+				-2.0
5,429,544	-				+0.0
5,429,544	-				-1.0
5,429,623	+				-1.0
5,429,623	+				-1.0
5,429,653	-				-2.6
5,429,709	+				-0.8
5,429,763	+		BT4137	0.11	+0.6
5,429,764	-		BT4137	0.11	-1.0
5,429,770	-		BT4137	0.11	-2.4
5,429,771	+		BT4137	0.11	-1.0
5,429,772	-		BT4137	0.11	+0.2
5,429,772	-		BT4137	0.11	-3.3
5,429,772	-		BT4137	0.11	-0.4
5,429,778	-		BT4137	0.12	+0.0
5,429,852	-		BT4137	0.13	-1.6
5,429,867	-		BT4137	0.14	-0.8
5,429,867	-		BT4137	0.14	-1.6
5,429,869	+		BT4137	0.14	+1.6
5,429,870	-		BT4137	0.14	-2.0
5,429,895	+		BT4137	0.14	-0.8
5,430,004	-		BT4137	0.17	+1.2
5,430,006	-		BT4137	0.17	+0.0
5,430,056	+		BT4137	0.19	-3.0
5,430,057	-		BT4137	0.19	-3.0
5,430,066	-		BT4137	0.19	+1.0
5,430,077	+		BT4137	0.19	-1.7
5,430,078	-		BT4137	0.19	-1.6
5,430,081	-		BT4137	0.19	+1.4
5,430,121	+		BT4137	0.20	-1.3
5,430,121	+		BT4137	0.20	-1.6
5,430,122	-		BT4137	0.20	-0.8
5,430,149	+		BT4137	0.21	-0.6
5,430,149	+		BT4137	0.21	-2.0
5,430,150	-		BT4137	0.21	-0.2
5,430,154	+		BT4137	0.21	-1.6
5,430,228	-		BT4137	0.23	-1.2
5,430,266	+		BT4137	0.24	-1.8
5,430,267	-		BT4137	0.24	-2.8
5,430,269	-		BT4137	0.24	+1.0
5,430,285	+		BT4137	0.24	-1.2
5,430,287	+		BT4137	0.24	-1.0
5,430,313	+		BT4137	0.25	-1.6
5,430,313	+		BT4137	0.25	-1.4
5,430,315	+		BT4137	0.25	-1.0
5,430,315	+		BT4137	0.25	+0.0
5,430,315	+		BT4137	0.25	-1.6
5,430,315	+				-1.6
5,430,316	-		BT4137	0.25	-2.8
5,430,316	-		BT4137	0.25	-1.6
5,430,316	-		BT4137	0.25	-2.2
5,430,317	+		BT4137	0.25	-1.6
5,430,318	-		BT4137	0.25	-2.3
5,430,350	+		BT4137	0.26	+0.2
5,430,371	+				+0.0
5,430,373	+		BT4137	0.27	+0.0
5,430,374	-		BT4137	0.27	-1.6
5,430,377	-		BT4137	0.27	+0.0
5,430,407	+		BT4137	0.28	-1.2
5,430,408	-		BT4137	0.28	-2.3
5,430,438	-		BT4137	0.28	-3.4
5,430,506	+		BT4137	0.30	-1.3
5,430,506	+		BT4137	0.30	-2.3
5,430,560	-		BT4137	0.31	+0.0
5,430,600	-		BT4137	0.32	-0.6
5,430,605	+		BT4137	0.33	-1.1
5,430,631	+		BT4137	0.33	-1.0
5,430,669	-		BT4137	0.34	-1.2
5,430,765	-		BT4137	0.37	+0.0
5,430,824	+		BT4137	0.38	+0.0
5,430,854	+		BT4137	0.39	+0.5
5,430,854	+		BT4137	0.39	-0.6
5,430,855	-		BT4137	0.39	-2.6
5,430,894	-		BT4137	0.40	+1.0
5,430,947	+		BT4137	0.41	-3.1
5,430,947	+		BT4137	0.41	-1.0
5,430,953	-		BT4137	0.41	+0.0
5,430,966	+		BT4137	0.42	-1.6
5,431,002	-		BT4137	0.43	-2.3
5,431,009	+		BT4137	0.43	-2.3
5,431,014	-		BT4137	0.43	+0.0
5,431,015	+		BT4137	0.43	+0.1
5,431,150	-		BT4137	0.46	-3.6
5,431,192	-		BT4137	0.47	-1.0
5,431,192	-		BT4137	0.47	-0.1
5,431,192	-		BT4137	0.47	-2.0
5,431,193	+		BT4137	0.47	+0.1
5,431,220	+		BT4137	0.48	-1.0
5,431,229	+		BT4137	0.48	-1.6
5,431,262	-		BT4137	0.49	-1.9
5,431,319	+		BT4137	0.51	-2.0
5,431,349	+		BT4137	0.51	-3.6
5,431,417	+		BT4137	0.53	+0.6
5,431,449	+		BT4137	0.54	+1.2
5,431,449	+		BT4137	0.54	-3.0
5,431,449	+		BT4137	0.54	+0.0
5,431,466	+		BT4137	0.54	-0.2
5,431,467	-		BT4137	0.54	-2.3
5,431,487	+		BT4137	0.55	-2.6
5,431,518	-		BT4137	0.56	-1.6
5,431,578	+		BT4137	0.57	-1.3
5,431,579	-		BT4137	0.57	-2.0
5,431,581	-		BT4137	0.57	-1.6
5,431,742	-		BT4137	0.61	-2.8
5,431,969	+		BT4137	0.67	-1.6
5,432,012	+		BT4137	0.68	-3.8
5,432,038	+		BT4137	0.69	-0.7
5,432,131	+		BT4137	0.71	-1.6
5,432,287	-		BT4137	0.75	+0.6
5,432,292	-		BT4137	0.75	-2.0
5,432,296	+				-2.3
5,432,456	+		BT4137	0.80	+1.5
5,432,457	-		BT4137	0.80	-0.5
5,432,457	-		BT4137	0.80	+1.0
5,432,513	+		BT4137	0.81	+0.0
5,432,667	+		BT4137	0.85	-0.3
5,432,668	-		BT4137	0.85	-3.7
5,432,678	+		BT4137	0.85	-1.0
5,432,712	-		BT4137	0.86	-1.0
5,432,718	-		BT4137	0.86	-1.2
5,432,718	-		BT4137	0.86	-2.3
5,432,768	+		BT4137	0.88	+0.3
5,432,887	+				+2.8
5,433,005	+				-1.6
5,433,014	-				-2.0
5,433,167	+				-3.0
5,433,167	+				-3.4
5,433,171	-				-1.0
5,433,174	-				-1.6
5,433,181	-				-1.0
5,433,188	+				-1.7
5,433,197	+				+0.0
5,433,204	+				+1.0
5,433,205	-				+0.0
5,433,255	+				-2.0
5,433,268	+				-2.6
5,433,268	+				-0.6
5,433,268	+				+0.0
5,433,274	-				-1.6
5,433,357	-				-4.0
5,433,357	-				-3.3
5,433,372	+				-2.3
5,433,395	+				+0.0
5,433,396	-				-0.7
5,433,559	-		BT4138	0.16	-1.0
5,433,559	-		BT4138	0.16	+0.3
5,433,636	+		BT4138	0.22	-2.3
5,433,731	+		BT4138	0.31	-1.6
5,433,732	-		BT4138	0.31	-2.3
5,433,732	-		BT4138	0.31	-1.0
5,433,733	+		BT4138	0.31	-1.0
5,433,734	-		BT4138	0.31	-2.3
5,433,781	+		BT4138	0.35	-2.6
5,433,811	+		BT4138	0.37	+0.0
5,433,811	+		BT4138	0.37	-2.0
5,433,812	-		BT4138	0.38	-1.1
5,433,960	-		BT4138	0.50	-0.6
5,434,000	+		BT4138	0.54	-3.0
5,434,000	+		BT4138	0.54	+0.0
5,434,001	-		BT4138	0.54	-2.8
5,434,049	-		BT4138	0.58	-3.1
5,434,083	+		BT4138	0.61	-3.1
5,434,106	-		BT4138	0.63	-1.9
5,434,149	-		BT4138	0.66	-0.6
5,434,152	+		BT4138	0.67	-3.8
5,434,152	+		BT4138	0.67	-3.8
5,434,152	+		BT4138	0.67	-1.6
5,434,153	-		BT4138	0.67	+0.0