Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2842

Experiment: L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2841 and BT2842 are separated by 31 nucleotidesBT2842 and BT2843 are separated by 74 nucleotides BT2841: BT2841 - pyruvate kinase (NCBI ptt file), at 3,543,132 to 3,544,589 BT2841 BT2842: BT2842 - 3-dehydroquinate dehydratase (NCBI ptt file), at 3,544,621 to 3,545,043 BT2842 BT2843: BT2843 - integrase (NCBI ptt file), at 3,545,118 to 3,546,077 BT2843 Position (kb) 3544 3545 3546Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3544.982 kb on - strand, within BT2842at 3545.185 kb on - strandat 3545.230 kb on - strand, within BT2843at 3545.293 kb on + strand, within BT2843at 3545.555 kb on + strand, within BT2843at 3545.811 kb on - strand, within BT2843at 3545.822 kb on + strand, within BT2843at 3545.828 kb on - strand, within BT2843

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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3,544,982 - BT2842 0.85 -0.1
3,545,185 - -1.1
3,545,230 - BT2843 0.12 -1.1
3,545,293 + BT2843 0.18 -1.1
3,545,555 + BT2843 0.46 -2.4
3,545,811 - BT2843 0.72 -2.1
3,545,822 + BT2843 0.73 -2.4
3,545,828 - BT2843 0.74 -3.8

Or see this region's nucleotide sequence