Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4133

Experiment: L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4132 and BT4133 are separated by 15 nucleotidesBT4133 and BT4134 are separated by 32 nucleotides BT4132: BT4132 - putative chitobiase (NCBI ptt file), at 5,419,109 to 5,420,287 BT4132 BT4133: BT4133 - hypothetical protein (NCBI ptt file), at 5,420,303 to 5,421,565 BT4133 BT4134: BT4134 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 5,421,598 to 5,423,520 BT4134 Position (kb) 5420 5421 5422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5419.352 kb on + strand, within BT4132at 5419.352 kb on + strand, within BT4132at 5419.359 kb on - strand, within BT4132at 5419.389 kb on - strand, within BT4132at 5419.394 kb on + strand, within BT4132at 5419.395 kb on - strand, within BT4132at 5419.470 kb on - strand, within BT4132at 5419.558 kb on + strand, within BT4132at 5419.558 kb on + strand, within BT4132at 5419.559 kb on - strand, within BT4132at 5419.561 kb on - strand, within BT4132at 5419.561 kb on - strand, within BT4132at 5419.568 kb on - strand, within BT4132at 5419.596 kb on - strand, within BT4132at 5419.596 kb on - strand, within BT4132at 5419.600 kb on + strand, within BT4132at 5419.602 kb on + strand, within BT4132at 5419.606 kb on - strand, within BT4132at 5419.606 kb on - strand, within BT4132at 5419.674 kb on + strand, within BT4132at 5419.674 kb on + strand, within BT4132at 5419.715 kb on + strand, within BT4132at 5419.715 kb on + strand, within BT4132at 5419.715 kb on + strand, within BT4132at 5419.780 kb on - strand, within BT4132at 5419.784 kb on - strand, within BT4132at 5419.828 kb on + strand, within BT4132at 5419.828 kb on + strand, within BT4132at 5419.904 kb on + strand, within BT4132at 5419.904 kb on + strand, within BT4132at 5419.904 kb on + strand, within BT4132at 5419.954 kb on + strand, within BT4132at 5419.972 kb on + strand, within BT4132at 5420.008 kb on + strand, within BT4132at 5420.109 kb on - strand, within BT4132at 5420.176 kb on - strandat 5420.199 kb on + strandat 5420.217 kb on + strandat 5420.218 kb on - strandat 5420.218 kb on - strandat 5420.218 kb on - strandat 5420.268 kb on + strandat 5420.278 kb on + strandat 5420.278 kb on + strandat 5420.297 kb on - strandat 5420.353 kb on - strandat 5420.454 kb on - strand, within BT4133at 5420.497 kb on + strand, within BT4133at 5420.497 kb on + strand, within BT4133at 5420.497 kb on + strand, within BT4133at 5420.497 kb on + strand, within BT4133at 5420.499 kb on + strand, within BT4133at 5420.500 kb on - strand, within BT4133at 5420.539 kb on + strand, within BT4133at 5420.539 kb on + strand, within BT4133at 5420.564 kb on + strand, within BT4133at 5420.580 kb on + strand, within BT4133at 5420.581 kb on - strand, within BT4133at 5420.584 kb on + strand, within BT4133at 5420.585 kb on - strand, within BT4133at 5420.611 kb on - strand, within BT4133at 5420.611 kb on - strand, within BT4133at 5420.614 kb on + strand, within BT4133at 5420.615 kb on - strand, within BT4133at 5420.615 kb on - strand, within BT4133at 5420.636 kb on - strand, within BT4133at 5420.765 kb on - strand, within BT4133at 5420.791 kb on - strand, within BT4133at 5420.964 kb on - strand, within BT4133at 5421.019 kb on + strand, within BT4133at 5421.019 kb on + strand, within BT4133at 5421.019 kb on + strand, within BT4133at 5421.041 kb on + strand, within BT4133at 5421.074 kb on + strand, within BT4133at 5421.275 kb on + strand, within BT4133at 5421.275 kb on + strand, within BT4133at 5421.294 kb on + strand, within BT4133at 5421.307 kb on + strand, within BT4133at 5421.336 kb on + strand, within BT4133at 5421.337 kb on - strand, within BT4133at 5421.344 kb on + strand, within BT4133at 5421.348 kb on - strand, within BT4133at 5421.391 kb on + strand, within BT4133at 5421.420 kb on - strand, within BT4133at 5421.421 kb on + strand, within BT4133at 5421.443 kb on + strandat 5421.443 kb on + strandat 5421.443 kb on + strandat 5421.443 kb on + strandat 5421.443 kb on + strandat 5421.529 kb on - strandat 5421.543 kb on - strandat 5421.546 kb on - strandat 5421.599 kb on + strandat 5421.696 kb on - strandat 5421.739 kb on + strandat 5421.743 kb on + strandat 5421.744 kb on - strandat 5421.787 kb on + strandat 5421.787 kb on + strandat 5421.787 kb on + strandat 5421.856 kb on - strand, within BT4134at 5421.953 kb on + strand, within BT4134at 5421.957 kb on + strand, within BT4134at 5421.960 kb on - strand, within BT4134at 5421.960 kb on - strand, within BT4134at 5422.007 kb on + strand, within BT4134at 5422.017 kb on - strand, within BT4134at 5422.017 kb on - strand, within BT4134at 5422.050 kb on - strand, within BT4134at 5422.090 kb on - strand, within BT4134at 5422.090 kb on - strand, within BT4134at 5422.124 kb on + strand, within BT4134at 5422.131 kb on - strand, within BT4134at 5422.143 kb on + strand, within BT4134at 5422.144 kb on - strand, within BT4134at 5422.252 kb on - strand, within BT4134at 5422.286 kb on + strand, within BT4134at 5422.424 kb on + strand, within BT4134at 5422.501 kb on + strand, within BT4134at 5422.508 kb on - strand, within BT4134at 5422.517 kb on - strand, within BT4134at 5422.536 kb on + strand, within BT4134at 5422.549 kb on - strand, within BT4134

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (N); Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
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5,419,352 + BT4132 0.21 -2.0
5,419,352 + BT4132 0.21 -2.3
5,419,359 - BT4132 0.21 -0.7
5,419,389 - BT4132 0.24 -2.5
5,419,394 + BT4132 0.24 +0.0
5,419,395 - BT4132 0.24 -1.7
5,419,470 - BT4132 0.31 -2.0
5,419,558 + BT4132 0.38 +0.0
5,419,558 + BT4132 0.38 -0.3
5,419,559 - BT4132 0.38 -3.1
5,419,561 - BT4132 0.38 -2.3
5,419,561 - BT4132 0.38 -1.0
5,419,568 - BT4132 0.39 -1.1
5,419,596 - BT4132 0.41 -0.5
5,419,596 - BT4132 0.41 -3.4
5,419,600 + BT4132 0.42 -1.0
5,419,602 + BT4132 0.42 -2.0
5,419,606 - BT4132 0.42 +0.0
5,419,606 - BT4132 0.42 +0.0
5,419,674 + BT4132 0.48 -2.3
5,419,674 + BT4132 0.48 -0.7
5,419,715 + BT4132 0.51 -0.7
5,419,715 + BT4132 0.51 -1.5
5,419,715 + BT4132 0.51 -2.0
5,419,780 - BT4132 0.57 -2.3
5,419,784 - BT4132 0.57 -0.2
5,419,828 + BT4132 0.61 -3.0
5,419,828 + BT4132 0.61 +0.0
5,419,904 + BT4132 0.67 +0.0
5,419,904 + BT4132 0.67 -1.2
5,419,904 + BT4132 0.67 -2.5
5,419,954 + BT4132 0.72 -1.5
5,419,972 + BT4132 0.73 +0.0
5,420,008 + BT4132 0.76 -1.8
5,420,109 - BT4132 0.85 -0.4
5,420,176 - -3.5
5,420,199 + +0.0
5,420,217 + -1.3
5,420,218 - +0.0
5,420,218 - -1.5
5,420,218 - -2.8
5,420,268 + +0.0
5,420,278 + -1.5
5,420,278 + -1.8
5,420,297 - -3.0
5,420,353 - +0.0
5,420,454 - BT4133 0.12 -1.0
5,420,497 + BT4133 0.15 +1.0
5,420,497 + BT4133 0.15 +0.4
5,420,497 + BT4133 0.15 -1.2
5,420,497 + BT4133 0.15 -3.8
5,420,499 + BT4133 0.16 +2.0
5,420,500 - BT4133 0.16 -3.9
5,420,539 + BT4133 0.19 -2.3
5,420,539 + BT4133 0.19 -0.5
5,420,564 + BT4133 0.21 -2.0
5,420,580 + BT4133 0.22 +2.6
5,420,581 - BT4133 0.22 +0.2
5,420,584 + BT4133 0.22 +2.8
5,420,585 - BT4133 0.22 -0.5
5,420,611 - BT4133 0.24 +0.5
5,420,611 - BT4133 0.24 -2.3
5,420,614 + BT4133 0.25 +0.0
5,420,615 - BT4133 0.25 +0.0
5,420,615 - BT4133 0.25 -2.8
5,420,636 - BT4133 0.26 -2.3
5,420,765 - BT4133 0.37 +0.0
5,420,791 - BT4133 0.39 -4.0
5,420,964 - BT4133 0.52 -0.1
5,421,019 + BT4133 0.57 +0.0
5,421,019 + BT4133 0.57 +0.0
5,421,019 + BT4133 0.57 +1.0
5,421,041 + BT4133 0.58 +0.0
5,421,074 + BT4133 0.61 -1.5
5,421,275 + BT4133 0.77 -2.3
5,421,275 + BT4133 0.77 -1.3
5,421,294 + BT4133 0.78 -1.5
5,421,307 + BT4133 0.79 -1.0
5,421,336 + BT4133 0.82 -0.7
5,421,337 - BT4133 0.82 -2.5
5,421,344 + BT4133 0.82 -2.0
5,421,348 - BT4133 0.83 -1.3
5,421,391 + BT4133 0.86 -1.0
5,421,420 - BT4133 0.88 -1.5
5,421,421 + BT4133 0.89 -3.8
5,421,443 + +0.0
5,421,443 + -2.1
5,421,443 + -2.0
5,421,443 + -2.3
5,421,443 + +0.0
5,421,529 - -0.4
5,421,543 - -2.1
5,421,546 - -1.1
5,421,599 + -2.0
5,421,696 - -3.3
5,421,739 + -2.3
5,421,743 + +1.4
5,421,744 - -2.0
5,421,787 + +0.0
5,421,787 + -2.3
5,421,787 + -1.5
5,421,856 - BT4134 0.13 -1.0
5,421,953 + BT4134 0.18 -0.5
5,421,957 + BT4134 0.19 -0.4
5,421,960 - BT4134 0.19 -3.3
5,421,960 - BT4134 0.19 -0.5
5,422,007 + BT4134 0.21 -1.1
5,422,017 - BT4134 0.22 -2.0
5,422,017 - BT4134 0.22 -1.6
5,422,050 - BT4134 0.24 -4.2
5,422,090 - BT4134 0.26 -2.0
5,422,090 - BT4134 0.26 -2.3
5,422,124 + BT4134 0.27 +1.6
5,422,131 - BT4134 0.28 -1.0
5,422,143 + BT4134 0.28 +0.5
5,422,144 - BT4134 0.28 +0.0
5,422,252 - BT4134 0.34 -1.5
5,422,286 + BT4134 0.36 +0.0
5,422,424 + BT4134 0.43 +0.0
5,422,501 + BT4134 0.47 -1.1
5,422,508 - BT4134 0.47 -2.5
5,422,517 - BT4134 0.48 -1.0
5,422,536 + BT4134 0.49 -1.5
5,422,549 - BT4134 0.49 -0.8

Or see this region's nucleotide sequence